Difference between revisions of "TSS:Mm 161013.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BC026530= | |BC026530= | ||
|Tcd1d16= | |Tcd1d16= | ||
| − | |all_trans= | + | |all_trans=MGI:2443893 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_172443 | |nearest_refseq=NM_172443 | ||
|nearest_unigene=Mm.205263 | |nearest_unigene=Mm.205263 | ||
| − | |num_trans= | + | |num_trans=207607 |
|species=mouse | |species=mouse | ||
|start=119228507 | |start=119228507 | ||
|start_of_center_position=119228507 | |start_of_center_position=119228507 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000235971.1 | + | |transcript_name=ENSMUST00000235971.1 AK046971 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_161013.1 | |tss_id=mm_161013.1 | ||
Latest revision as of 08:52, 27 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119228507 |
|---|---|
| End of the center position in the TSS region: | 119228508 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000235971.1 AK046971 |
|---|---|
| Distance: | 64 |
| Num_trans: | 207607 |
| All_trans: | MGI:2443893 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_172443 |
| Entrez ID: | 207592 |
| Nearest Unigene: | Mm.205263 |
| Nearest Refseq: | NM_172443 |
| Nearest Ensembl: | ENSMUSG00000039976 |
| Gene Name: | coiled-coil domain containing 40 |
| Gene Alias: | B930087K01|BC026530|Tcd1d16 |
| Gene Description: | TBC1 domain family, member 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
