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Difference between revisions of "TSS:Mm 99321.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000107249.7:-35 BC090395:-40 ENSMUST00000139939.1:-43 AK088211:-45 BC024366:-49 BC082284:-49 AK002945:-51 AK010627:-52 AK012566:-55 AK008120:-60 AK132027:-63 AK146291:-63 AF214527:-66 ENSMUST00000077856.12:-183 NM_011289:-236
+
|all_trans=MGI:98036
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.08
 
|cpg_percent=0.08
Line 22: Line 22:
 
|nearest_refseq=NM_011289
 
|nearest_refseq=NM_011289
 
|nearest_unigene=Mm.340658
 
|nearest_unigene=Mm.340658
|num_trans=15
+
|num_trans=19942
 
|species=mouse
 
|species=mouse
 
|start=101442480
 
|start=101442480

Latest revision as of 19:23, 28 July 2021

Basic information about the TSS


TSS ID:mm_99321.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:101442480
End:101442494
Strand:+
TSS Score:1
Start of the center position in the TSS region:101442487
End of the center position in the TSS region:101442488



Gene and protein annotation


Transcript_name:ENSMUST00000107249.7
Distance:-35
GeneID:19942
HGNC/MGI_ID:MGI:98036
UniProt_ID:Q5BLJ9
Gene_name:ribosomal protein L27
Gene_symbol:Rpl27
Gene_synonyms:
Gene_source:MGI:98036



Transcript annotation


Transcript_name:ENSMUST00000107249.7
Distance:-35
Num_trans:19942
All_trans:MGI:98036



TATA-Box annotation


Distance to TSS:242
Nearest PromoterID:NM_011289
Entrez ID:19942
Nearest Unigene:Mm.340658
Nearest Refseq:NM_011289
Nearest Ensembl:ENSMUSG00000063316
Gene Name:ribosomal protein L27
Gene Alias:-
Gene Description:ribosomal protein L27
Gene Type:protein-coding
CpG%:0.08
GC%:0.641791
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):