Difference between revisions of "TSS:Hg 232202.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_110370:286 ENST00000563601.1:326 AK123677:326 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=286 |
|distance_to_tss=-5391 | |distance_to_tss=-5391 | ||
| − | |end= | + | |end=17644212 |
| + | |end_of_center_position=17644208 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=VIM antisense RNA 1 | |gene_description=VIM antisense RNA 1 | ||
| − | |gene_name= | + | |gene_id=102723166 |
| + | |gene_name=STAM divergent transcript | ||
| + | |gene_source=HGNC:49568 | ||
| + | |gene_symbol=STAM-DT | ||
| + | |gene_synonyms=locus3182 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:49568 | ||
|nearest_ensembl=ENSG00000229124 | |nearest_ensembl=ENSG00000229124 | ||
|nearest_promoter_id=NR_108061 | |nearest_promoter_id=NR_108061 | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
| − | |start= | + | |start=17644203 |
| − | |strand= | + | |start_of_center_position=17644207 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name=NR_110370.1 |
| + | |tss_classification=yes | ||
|tss_id=hg_232202.1 | |tss_id=hg_232202.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:05, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17644207 |
|---|---|
| End of the center position in the TSS region: | 17644208 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_110370.1 |
|---|---|
| Distance: | 286 |
| Num_trans: | 3 |
| All_trans: | NR_110370:286 ENST00000563601.1:326 AK123677:326 |
TATA-Box annotation
| Distance to TSS: | -5391 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | STAM divergent transcript |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
