Difference between revisions of "TSS:Hg 232203.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:1402 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-31 |
|distance_to_tss=-6388 | |distance_to_tss=-6388 | ||
| − | |end= | + | |end=18140844 |
| + | |end_of_center_position=18140844 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=VIM antisense RNA 1 | |gene_description=VIM antisense RNA 1 | ||
| − | |gene_id= | + | |gene_id=783 |
| − | |gene_name= | + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1402 |
| − | |gene_symbol= | + | |gene_symbol=CACNB2 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1402 |
|nearest_ensembl=ENSG00000229124 | |nearest_ensembl=ENSG00000229124 | ||
|nearest_promoter_id=NR_108061 | |nearest_promoter_id=NR_108061 | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |num_trans= | + | |num_trans=783 |
|species=human | |species=human | ||
| − | |start= | + | |start=18140843 |
| + | |start_of_center_position=18140843 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=14(TCTTTTAAGGAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000643096.2 ENST00000645287.1 AK307526 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232203.1 | |tss_id=hg_232203.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y555 Q08289 |
}} | }} | ||
Latest revision as of 11:05, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18140843 |
|---|---|
| End of the center position in the TSS region: | 18140844 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000643096.2 ENST00000645287.1 AK307526 |
|---|---|
| Distance: | -31 |
| Num_trans: | 783 |
| All_trans: | HGNC:1402 |
TATA-Box annotation
| Distance to TSS: | -6388 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 14(TCTTTTAAGGAA,+,0.00) |
