Difference between revisions of "TSS:Hg 23311.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000439442.1:70 uc061oyl.1:70 |chr=chr2 |cpg_percent=0.01 |distance=70 |distance_to_tss=-13648 |end=161231116 |entrez_id=100996579 |gc_percent=0.39...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:11562 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-13648 | |distance_to_tss=-13648 | ||
|end=161231116 | |end=161231116 | ||
| + | |end_of_center_position=161231092 | ||
|entrez_id=100996579 | |entrez_id=100996579 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:11562 | |hgnc_mgi_id=HGNC:11562 | ||
|nearest_ensembl=ENSG00000227403 | |nearest_ensembl=ENSG00000227403 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_110164 |
|nearest_refseq=NR_110163 | |nearest_refseq=NR_110163 | ||
|nearest_unigene=Hs.660929 | |nearest_unigene=Hs.660929 | ||
| − | |num_trans= | + | |num_trans=10010 |
|species=human | |species=human | ||
|start=161231066 | |start=161231066 | ||
| + | |start_of_center_position=161231091 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000439442 | + | |transcript_name=ENST00000439442.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_23311.1 | |tss_id=hg_23311.1 | ||
Latest revision as of 11:25, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161231091 |
|---|---|
| End of the center position in the TSS region: | 161231092 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000439442.1 |
|---|---|
| Distance: | 70 |
| Num_trans: | 10010 |
| All_trans: | HGNC:11562 |
TATA-Box annotation
| Distance to TSS: | -13648 |
|---|---|
| Nearest PromoterID: | NR_110164 |
| Entrez ID: | 100996579 |
| Nearest Unigene: | Hs.660929 |
| Nearest Refseq: | NR_110163 |
| Nearest Ensembl: | ENSG00000227403 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1806 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
