Difference between revisions of "TSS:Hg 239128.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=NR_003286:25 | |all_trans=NR_003286:25 | ||
| − | |chr= | + | |chr=chr2 |
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-25 | |distance_to_tss=-25 | ||
| − | |end= | + | |end=20200907 |
| − | |entrez_id= | + | |end_of_center_position=20200904 |
| + | |entrez_id=109910380 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=RNA, 18S ribosomal N3 |
|gene_id=100008588 | |gene_id=100008588 | ||
| − | |gene_name= | + | |gene_name=RNA18SN3 |
|gene_source=HGNC:37657 | |gene_source=HGNC:37657 | ||
|gene_symbol=RNA18S5 | |gene_symbol=RNA18S5 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:37657 | |hgnc_mgi_id=HGNC:37657 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_146152 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_146152 |
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=20200899 |
| − | |strand= | + | |start_of_center_position=20200903 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=no | ||
|tss_id=hg_239128.1 | |tss_id=hg_239128.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:12, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 20200903 |
|---|---|
| End of the center position in the TSS region: | 20200904 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | NR_003286:25 |
TATA-Box annotation
| Distance to TSS: | -25 |
|---|---|
| Nearest PromoterID: | NR_146152 |
| Entrez ID: | 109910380 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_146152 |
| Nearest Ensembl: | |
| Gene Name: | RNA18SN3 |
| Gene Alias: | - |
| Gene Description: | RNA, 18S ribosomal N3 |
| Gene Type: | rRNA |
| CpG%: | 0.145 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
