Difference between revisions of "TSS:Hg 241139.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CD36L2= | ||
| + | |EPM4= | ||
| + | |HLGP85= | ||
| + | |LGP85= | ||
| + | |LIMP-2= | ||
| + | |LIMPII= | ||
| + | |SR-BII= | ||
|all_trans=ENST00000510197.5:237 NM_001242936:237 uc003hjv.4:237 AK124936:237 ENST00000512895.5:301 uc062xlv.1:301 | |all_trans=ENST00000510197.5:237 NM_001242936:237 uc003hjv.4:237 AK124936:237 ENST00000512895.5:301 uc062xlv.1:301 | ||
| − | |chr= | + | |chr=chr5 |
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=23 |
| − | |end= | + | |end=153802406 |
| + | |end_of_center_position=153802404 | ||
|entrez_id=950 | |entrez_id=950 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=AMRF | + | |gene_alias=AMRF{{!}}CD36L2{{!}}EPM4{{!}}HLGP85{{!}}LGP85{{!}}LIMP-2{{!}}LIMPII{{!}}SR-BII |
|gene_description=scavenger receptor class B member 2 | |gene_description=scavenger receptor class B member 2 | ||
|gene_id=100129583 | |gene_id=100129583 | ||
| − | |gene_name= | + | |gene_name=SCARB2 |
|gene_source=HGNC:34343 | |gene_source=HGNC:34343 | ||
|gene_symbol=FAM47E | |gene_symbol=FAM47E | ||
| Line 21: | Line 29: | ||
|nearest_refseq=NM_005506 | |nearest_refseq=NM_005506 | ||
|nearest_unigene=Hs.349656 | |nearest_unigene=Hs.349656 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=153802400 |
| − | |strand= | + | |start_of_center_position=153802403 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=no | ||
|tss_id=hg_241139.1 | |tss_id=hg_241139.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q6ZV65 | |uniprot_id=Q6ZV65 | ||
}} | }} | ||
Latest revision as of 11:58, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 153802403 |
|---|---|
| End of the center position in the TSS region: | 153802404 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000510197.5:237 NM_001242936:237 uc003hjv.4:237 AK124936:237 ENST00000512895.5:301 uc062xlv.1:301 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_005506 |
| Entrez ID: | 950 |
| Nearest Unigene: | Hs.349656 |
| Nearest Refseq: | NM_005506 |
| Nearest Ensembl: | ENSG00000138760 |
| Gene Name: | SCARB2 |
| Gene Alias: | AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII |
| Gene Description: | scavenger receptor class B member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
