Difference between revisions of "TSS:Hg 242193.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr6 |cpg_percent=0 |distance= |distance_to_tss=22053 |end=35642738 |entrez_id=100847048 |gc_percent=0.467662 |gene_alias=- |gene_description=microRNA 5690 |g...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |chr= | + | |all_trans=HGNC:3490 |
| + | |chr=chr7 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=13 |
|distance_to_tss=22053 | |distance_to_tss=22053 | ||
| − | |end= | + | |end=13991438 |
| + | |end_of_center_position=13991438 | ||
|entrez_id=100847048 | |entrez_id=100847048 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=microRNA 5690 | |gene_description=microRNA 5690 | ||
| − | |gene_name= | + | |gene_id=2115 |
| + | |gene_name=ETS variant transcription factor 1 | ||
| + | |gene_source=HGNC:3490 | ||
| + | |gene_symbol=ETV1 | ||
| + | |gene_synonyms=ER81 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000265527 | |nearest_ensembl=ENSG00000265527 | ||
|nearest_promoter_id=NR_049873 | |nearest_promoter_id=NR_049873 | ||
|nearest_refseq=NR_049873 | |nearest_refseq=NR_049873 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=2115 |
|species=human | |species=human | ||
| − | |start= | + | |start=13991437 |
| − | |strand= | + | |start_of_center_position=13991437 |
| − | |tata_box= | + | |strand=- |
| − | |transcript_name= | + | |tata_box=-17(CCTTTAATACTC,+,0.00) |
| − | |tss_classification= | + | |transcript_name=ENST00000242066.9 ENST00000421381.5 |
| + | |tss_classification=yes | ||
|tss_id=hg_242193.1 | |tss_id=hg_242193.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=C9J4P4 P50549 | ||
}} | }} | ||
Latest revision as of 14:42, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13991437 |
|---|---|
| End of the center position in the TSS region: | 13991438 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000242066.9 ENST00000421381.5 |
|---|---|
| Distance: | 13 |
| Num_trans: | 2115 |
| All_trans: | HGNC:3490 |
TATA-Box annotation
| Distance to TSS: | 22053 |
|---|---|
| Nearest PromoterID: | NR_049873 |
| Entrez ID: | 100847048 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_049873 |
| Nearest Ensembl: | ENSG00000265527 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | - |
| Gene Description: | microRNA 5690 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -17(CCTTTAATACTC,+,0.00) |
