Difference between revisions of "TSS:Hg 242431.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CAPZ= | ||
| + | |all_trans=NM_001287061:4 ENST00000439720.3:11 AK303006:11 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=4 |
| − | |distance_to_tss= | + | |distance_to_tss=32 |
| − | |end= | + | |end=66755878 |
| + | |end_of_center_position=66755878 | ||
|entrez_id=830 | |entrez_id=830 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=CAPPA2 | + | |gene_alias=CAPPA2{{!}}CAPZ |
| − | |gene_description=capping actin protein of muscle Z-line alpha | + | |gene_description=capping actin protein of muscle Z-line subunit alpha 2 |
| − | |gene_name= | + | |gene_id=27342 |
| + | |gene_name=RAB guanine nucleotide exchange factor 1 | ||
| + | |gene_source=HGNC:17676 | ||
| + | |gene_symbol=RABGEF1 | ||
| + | |gene_synonyms=RABEX5 rabex-5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17676 | ||
|nearest_ensembl=ENSG00000198898 | |nearest_ensembl=ENSG00000198898 | ||
|nearest_promoter_id=NM_006136 | |nearest_promoter_id=NM_006136 | ||
|nearest_refseq=NM_006136 | |nearest_refseq=NM_006136 | ||
|nearest_unigene=Hs.446123 | |nearest_unigene=Hs.446123 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
| − | |start= | + | |start=66755877 |
| − | |strand= | + | |start_of_center_position=66755877 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=NM_001287061.2 |
| + | |tss_classification=no | ||
|tss_id=hg_242431.1 | |tss_id=hg_242431.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q9UJ41 | ||
}} | }} | ||
Latest revision as of 14:47, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 66755877 |
|---|---|
| End of the center position in the TSS region: | 66755878 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001287061.2 |
|---|---|
| Distance: | 4 |
| Num_trans: | 3 |
| All_trans: | NM_001287061:4 ENST00000439720.3:11 AK303006:11 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_006136 |
| Entrez ID: | 830 |
| Nearest Unigene: | Hs.446123 |
| Nearest Refseq: | NM_006136 |
| Nearest Ensembl: | ENSG00000198898 |
| Gene Name: | RAB guanine nucleotide exchange factor 1 |
| Gene Alias: | CAPPA2|CAPZ |
| Gene Description: | capping actin protein of muscle Z-line subunit alpha 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
