Difference between revisions of "TSS:Hg 242843.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |chr= | + | |all_trans=HGNC:6947 |
| + | |chr=chr8 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=57 |
| − | |distance_to_tss= | + | |distance_to_tss=28 |
| − | |end= | + | |end=47960128 |
| + | |end_of_center_position=47960119 | ||
|entrez_id=9069 | |entrez_id=9069 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=claudin 12 | |gene_description=claudin 12 | ||
| − | |gene_name= | + | |gene_id=4173 |
| + | |gene_name=minichromosome maintenance complex component 4 | ||
| + | |gene_source=HGNC:6947 | ||
| + | |gene_symbol=MCM4 | ||
| + | |gene_synonyms=CDC54 MGC33310 P1-Cdc21 hCdc21 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6947 | ||
|nearest_ensembl=ENSG00000157224 | |nearest_ensembl=ENSG00000157224 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001185073 |
|nearest_refseq=NM_012129 | |nearest_refseq=NM_012129 | ||
|nearest_unigene=Hs.731917 | |nearest_unigene=Hs.731917 | ||
| − | |num_trans= | + | |num_trans=4173 |
|species=human | |species=human | ||
| − | |start= | + | |start=47960109 |
| − | |strand= | + | |start_of_center_position=47960118 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=ENST00000518221.5 |
| + | |tss_classification=yes | ||
|tss_id=hg_242843.1 | |tss_id=hg_242843.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=E5RFR3 | ||
}} | }} | ||
Latest revision as of 14:56, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 47960118 |
|---|---|
| End of the center position in the TSS region: | 47960119 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000518221.5 |
|---|---|
| Distance: | 57 |
| Num_trans: | 4173 |
| All_trans: | HGNC:6947 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001185073 |
| Entrez ID: | 9069 |
| Nearest Unigene: | Hs.731917 |
| Nearest Refseq: | NM_012129 |
| Nearest Ensembl: | ENSG00000157224 |
| Gene Name: | minichromosome maintenance complex component 4 |
| Gene Alias: | - |
| Gene Description: | claudin 12 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
