Difference between revisions of "TSS:Hg 242844.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |CYP51= |
| − | |chr= | + | |CYPL1= |
| + | |LDM= | ||
| + | |P450-14DM= | ||
| + | |P450L1= | ||
| + | |all_trans=HGNC:9413 | ||
| + | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-18 |
| − | |distance_to_tss= | + | |distance_to_tss=64390 |
| − | |end= | + | |end=47960160 |
| + | |end_of_center_position=47960160 | ||
|entrez_id=1595 | |entrez_id=1595 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
| − | |gene_alias=CP51 | + | |gene_alias=CP51{{!}}CYP51{{!}}CYPL1{{!}}LDM{{!}}P450-14DM{{!}}P450L1 |
|gene_description=cytochrome P450 family 51 subfamily A member 1 | |gene_description=cytochrome P450 family 51 subfamily A member 1 | ||
| − | |gene_id= | + | |gene_id=5591 |
| − | |gene_name= | + | |gene_name=protein kinase, DNA-activated, catalytic subunit |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9413 |
| − | |gene_symbol= | + | |gene_symbol=PRKDC |
| − | |gene_synonyms= | + | |gene_synonyms=DNA-PKC DNA-PKcs DNAPK DNAPKc DNPK1 XRCC7 p350 p460 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9413 |
|nearest_ensembl=ENSG00000001630 | |nearest_ensembl=ENSG00000001630 | ||
|nearest_promoter_id=NM_000786 | |nearest_promoter_id=NM_000786 | ||
|nearest_refseq=NM_000786 | |nearest_refseq=NM_000786 | ||
|nearest_unigene=Hs.417077 | |nearest_unigene=Hs.417077 | ||
| − | |num_trans= | + | |num_trans=5591 |
|species=human | |species=human | ||
| − | |start= | + | |start=47960159 |
| − | |strand= | + | |start_of_center_position=47960159 |
| − | |tata_box= | + | |strand=- |
| − | |transcript_name= | + | |tata_box=0(CTCTCTAAAGAG,-,0.00) |
| − | |tss_classification= | + | |transcript_name=ENST00000338368.7 U34994 |
| + | |tss_classification=yes | ||
|tss_id=hg_242844.1 | |tss_id=hg_242844.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P78527 |
}} | }} | ||
Latest revision as of 14:56, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 47960159 |
|---|---|
| End of the center position in the TSS region: | 47960160 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000338368.7 U34994 |
|---|---|
| Distance: | -18 |
| Num_trans: | 5591 |
| All_trans: | HGNC:9413 |
TATA-Box annotation
| Distance to TSS: | 64390 |
|---|---|
| Nearest PromoterID: | NM_000786 |
| Entrez ID: | 1595 |
| Nearest Unigene: | Hs.417077 |
| Nearest Refseq: | NM_000786 |
| Nearest Ensembl: | ENSG00000001630 |
| Gene Name: | protein kinase, DNA-activated, catalytic subunit |
| Gene Alias: | CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 |
| Gene Description: | cytochrome P450 family 51 subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 0(CTCTCTAAAGAG,-,0.00) |
