Difference between revisions of "TSS:Hg 243231.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |SGK2= |
| − | |chr= | + | |SGKL= |
| + | |all_trans=HGNC:15984 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=165 |
| − | |distance_to_tss=- | + | |distance_to_tss=-399 |
| − | |end= | + | |end=33025309 |
| + | |end_of_center_position=33025302 | ||
|entrez_id=23678 | |entrez_id=23678 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=CISK | + | |gene_alias=CISK{{!}}SGK2{{!}}SGKL |
|gene_description=serum/glucocorticoid regulated kinase family member 3 | |gene_description=serum/glucocorticoid regulated kinase family member 3 | ||
| − | |gene_id= | + | |gene_id=54840 |
| − | |gene_name= | + | |gene_name=aprataxin |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:15984 |
| − | |gene_symbol= | + | |gene_symbol=APTX |
| − | |gene_synonyms= | + | |gene_synonyms=AOA AOA1 EAOH EOAHA FLJ20157 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:15984 |
|nearest_ensembl=ENSG00000104205 | |nearest_ensembl=ENSG00000104205 | ||
|nearest_promoter_id=NM_001033578 | |nearest_promoter_id=NM_001033578 | ||
|nearest_refseq=NM_013257 | |nearest_refseq=NM_013257 | ||
|nearest_unigene=Hs.613417 | |nearest_unigene=Hs.613417 | ||
| − | |num_trans= | + | |num_trans=54840 |
|species=human | |species=human | ||
| − | |start= | + | |start=33025294 |
| − | |strand= | + | |start_of_center_position=33025301 |
| − | |transcript_name= | + | |strand=- |
| + | |transcript_name=ENST00000673487.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243231.1 | |tss_id=hg_243231.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q7Z2E3 |
}} | }} | ||
Latest revision as of 15:04, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33025301 |
|---|---|
| End of the center position in the TSS region: | 33025302 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000673487.1 |
|---|---|
| Distance: | 165 |
| Num_trans: | 54840 |
| All_trans: | HGNC:15984 |
TATA-Box annotation
| Distance to TSS: | -399 |
|---|---|
| Nearest PromoterID: | NM_001033578 |
| Entrez ID: | 23678 |
| Nearest Unigene: | Hs.613417 |
| Nearest Refseq: | NM_013257 |
| Nearest Ensembl: | ENSG00000104205 |
| Gene Name: | aprataxin |
| Gene Alias: | CISK|SGK2|SGKL |
| Gene Description: | serum/glucocorticoid regulated kinase family member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
