Difference between revisions of "TSS:Hg 243439.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |ELP= |
| − | |chr= | + | |FTZ1= |
| + | |FTZF1= | ||
| + | |POF7= | ||
| + | |SF-1= | ||
| + | |SF1= | ||
| + | |SPGF8= | ||
| + | |SRXY3= | ||
| + | |all_trans=DQ593292:-32 S64650:178 AK026634:372 LF641695:373 LF641696:373 LF641697:373 LQ059297:373 LQ059298:373 LQ059299:373 MA264841:373 MA264842:373 MA264843:373 MS942517:373 MS942518:373 MS942519:373 X51525:374 AY029066:385 U25123:386 BC000845:390 BC018940:393 AB462504:398 BC008007:401 BC035825:409 BC035832:456 AB019564:484 | ||
| + | |chr=chrM | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance=- | + | |distance=-32 |
| − | |distance_to_tss= | + | |distance_to_tss=4107 |
| − | |end= | + | |end=1298 |
| + | |end_of_center_position=1296 | ||
|entrez_id=2516 | |entrez_id=2516 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=AD4BP | + | |gene_alias=AD4BP{{!}}ELP{{!}}FTZ1{{!}}FTZF1{{!}}POF7{{!}}SF-1{{!}}SF1{{!}}SPGF8{{!}}SRXX4{{!}}SRXY3{{!}}hSF-1 |
|gene_description=nuclear receptor subfamily 5 group A member 1 | |gene_description=nuclear receptor subfamily 5 group A member 1 | ||
|gene_id=2516 | |gene_id=2516 | ||
| − | |gene_name= | + | |gene_name=NR5A1 |
|gene_source=HGNC:7983 | |gene_source=HGNC:7983 | ||
|gene_symbol=NR5A1 | |gene_symbol=NR5A1 | ||
|gene_synonyms=AD4BP ELP FTZ1 SF-1 | |gene_synonyms=AD4BP ELP FTZ1 SF-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hSF-1= | ||
|hgnc_mgi_id=HGNC:7983 | |hgnc_mgi_id=HGNC:7983 | ||
|nearest_ensembl=ENSG00000136931 | |nearest_ensembl=ENSG00000136931 | ||
| Line 21: | Line 31: | ||
|nearest_refseq=NM_004959 | |nearest_refseq=NM_004959 | ||
|nearest_unigene=Hs.495108 | |nearest_unigene=Hs.495108 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
| − | |start= | + | |start=1293 |
| − | |strand= | + | |start_of_center_position=1295 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=DQ593292 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243439.1 | |tss_id=hg_243439.1 | ||
Latest revision as of 12:50, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1295 |
|---|---|
| End of the center position in the TSS region: | 1296 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | DQ593292 |
|---|---|
| Distance: | -32 |
| Num_trans: | 25 |
| All_trans: | DQ593292:-32 S64650:178 AK026634:372 LF641695:373 LF641696:373 LF641697:373 LQ059297:373 LQ059298:373 LQ059299:373 MA264841:373 MA264842:373 MA264843:373 MS942517:373 MS942518:373 MS942519:373 X51525:374 AY029066:385 U25123:386 BC000845:390 BC018940:393 AB462504:398 BC008007:401 BC035825:409 BC035832:456 AB019564:484 |
TATA-Box annotation
| Distance to TSS: | 4107 |
|---|---|
| Nearest PromoterID: | NM_004959 |
| Entrez ID: | 2516 |
| Nearest Unigene: | Hs.495108 |
| Nearest Refseq: | NM_004959 |
| Nearest Ensembl: | ENSG00000136931 |
| Gene Name: | NR5A1 |
| Gene Alias: | AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1 |
| Gene Description: | nuclear receptor subfamily 5 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
