Difference between revisions of "TSS:Hg 243481.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK293743:60 |chr=chr9 |cpg_percent=0.01 |distance=60 |distance_to_tss=49765 |end=129919370 |entrez_id=102466750 |gc_percent=0.273632 |gene_alias=hsa-mir...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=Y17170:-16 AK126611:29 AF054990:40 AB019564:-76 BC006998:98 BC035832:-104 Y17174:124 BC035825:-151 BC008007:-159 AB462504:-162 BC018940:-167 BC000845:-170 U25123:-174 AY029066:-175 X51525:-186 LF641695:-187 LF641696:-187 LF641697:-187 LQ059297:-187 LQ059298:-187 LQ059299:-187 MA264841:-187 MA264842:-187 MA264843:-187 MS942517:-187 MS942518:-187 MS942519:-187 AK026634:-188 BC018865:227 DQ593671:381 S64650:-382 AK026170:440 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-16 |
|distance_to_tss=49765 | |distance_to_tss=49765 | ||
| − | |end= | + | |end=1866 |
| + | |end_of_center_position=1862 | ||
|entrez_id=102466750 | |entrez_id=102466750 | ||
|gc_percent=0.273632 | |gc_percent=0.273632 | ||
| Line 11: | Line 12: | ||
|gene_description=microRNA 6855 | |gene_description=microRNA 6855 | ||
|gene_id=23048 | |gene_id=23048 | ||
| − | |gene_name= | + | |gene_name=MIR6855 |
|gene_source=HGNC:17069 | |gene_source=HGNC:17069 | ||
|gene_symbol=FNBP1 | |gene_symbol=FNBP1 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_106914 | |nearest_refseq=NR_106914 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
| − | |start= | + | |start=1857 |
| − | |strand= | + | |start_of_center_position=1861 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=Y17170 |
| + | |tss_classification=yes | ||
|tss_id=hg_243481.1 | |tss_id=hg_243481.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B4DEQ5 | |uniprot_id=B4DEQ5 | ||
}} | }} | ||
Latest revision as of 12:51, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1861 |
|---|---|
| End of the center position in the TSS region: | 1862 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | Y17170 |
|---|---|
| Distance: | -16 |
| Num_trans: | 32 |
| All_trans: | Y17170:-16 AK126611:29 AF054990:40 AB019564:-76 BC006998:98 BC035832:-104 Y17174:124 BC035825:-151 BC008007:-159 AB462504:-162 BC018940:-167 BC000845:-170 U25123:-174 AY029066:-175 X51525:-186 LF641695:-187 LF641696:-187 LF641697:-187 LQ059297:-187 LQ059298:-187 LQ059299:-187 MA264841:-187 MA264842:-187 MA264843:-187 MS942517:-187 MS942518:-187 MS942519:-187 AK026634:-188 BC018865:227 DQ593671:381 S64650:-382 AK026170:440 |
TATA-Box annotation
| Distance to TSS: | 49765 |
|---|---|
| Nearest PromoterID: | NR_106914 |
| Entrez ID: | 102466750 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106914 |
| Nearest Ensembl: | ENSG00000276124 |
| Gene Name: | MIR6855 |
| Gene Alias: | hsa-mir-6855 |
| Gene Description: | microRNA 6855 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.273632 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
