Difference between revisions of "TSS:Hg 243482.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=Y17170:-25 AK126611:26 AF054990:37 AB019564:-85 BC006998:95 BC035832:-113 Y17174:121 BC035825:-160 BC008007:-168 AB462504:-171 BC018940:-176 BC000845:-179 U25123:-183 AY029066:-184 X51525:-195 LF641695:-196 LF641696:-196 LF641697:-196 LQ059297:-196 LQ059298:-196 LQ059299:-196 MA264841:-196 MA264842:-196 MA264843:-196 MS942517:-196 MS942518:-196 MS942519:-196 AK026634:-197 BC018865:224 DQ593671:378 S64650:-391 AK026170:437 |
| − | |chr= | + | |chr=chrM |
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-25 |
| − | |distance_to_tss= | + | |distance_to_tss=48228 |
| − | |end= | + | |end=1869 |
| + | |end_of_center_position=1868 | ||
|entrez_id=23048 | |entrez_id=23048 | ||
|gc_percent=0.323383 | |gc_percent=0.323383 | ||
| Line 11: | Line 12: | ||
|gene_description=formin binding protein 1 | |gene_description=formin binding protein 1 | ||
|gene_id=23048 | |gene_id=23048 | ||
| − | |gene_name= | + | |gene_name=FNBP1 |
|gene_source=HGNC:17069 | |gene_source=HGNC:17069 | ||
|gene_symbol=FNBP1 | |gene_symbol=FNBP1 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_015033 | |nearest_refseq=NM_015033 | ||
|nearest_unigene=Hs.189409 | |nearest_unigene=Hs.189409 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
| − | |start= | + | |start=1866 |
| − | |strand= | + | |start_of_center_position=1867 |
| − | |transcript_name= | + | |strand=+ |
| + | |transcript_name=Y17170 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243482.1 | |tss_id=hg_243482.1 | ||
Latest revision as of 12:51, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 1867 |
|---|---|
| End of the center position in the TSS region: | 1868 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | Y17170 |
|---|---|
| Distance: | -25 |
| Num_trans: | 32 |
| All_trans: | Y17170:-25 AK126611:26 AF054990:37 AB019564:-85 BC006998:95 BC035832:-113 Y17174:121 BC035825:-160 BC008007:-168 AB462504:-171 BC018940:-176 BC000845:-179 U25123:-183 AY029066:-184 X51525:-195 LF641695:-196 LF641696:-196 LF641697:-196 LQ059297:-196 LQ059298:-196 LQ059299:-196 MA264841:-196 MA264842:-196 MA264843:-196 MS942517:-196 MS942518:-196 MS942519:-196 AK026634:-197 BC018865:224 DQ593671:378 S64650:-391 AK026170:437 |
TATA-Box annotation
| Distance to TSS: | 48228 |
|---|---|
| Nearest PromoterID: | NM_015033 |
| Entrez ID: | 23048 |
| Nearest Unigene: | Hs.189409 |
| Nearest Refseq: | NM_015033 |
| Nearest Ensembl: | ENSG00000187239 |
| Gene Name: | FNBP1 |
| Gene Alias: | FBP17 |
| Gene Description: | formin binding protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
