Difference between revisions of "TSS:Hg 243520.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC125018:100 BC125019:100 ENST00000431893.3:-485 uc064xck.1:-485 DQ903855:-485 |chr=chr9 |cpg_percent=0.045 |distance=100 |distance_to_tss=6459 |end=136...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |SEC16L= |
| − | |chr= | + | |all_trans=AB462505:67 BC009316:-101 AK026170:-329 DQ596276:357 DQ593671:-388 |
| + | |chr=chrM | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=67 |
| − | |distance_to_tss= | + | |distance_to_tss=-6414 |
| − | |end= | + | |end=2645 |
| − | |entrez_id= | + | |end_of_center_position=2640 |
| + | |entrez_id=158055 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=chromosome 9 open reading frame 163 |
|gene_id=9919 | |gene_id=9919 | ||
| − | |gene_name= | + | |gene_name=C9orf163 |
|gene_source=HGNC:29006 | |gene_source=HGNC:29006 | ||
|gene_symbol=SEC16A | |gene_symbol=SEC16A | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29006 | |hgnc_mgi_id=HGNC:29006 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152571 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_152571 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.212613 |
|num_trans=5 | |num_trans=5 | ||
| + | |p250= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=2634 |
| − | |strand= | + | |start_of_center_position=2639 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=AB462505 |
| + | |tss_classification=yes | ||
|tss_id=hg_243520.1 | |tss_id=hg_243520.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A4QN18 A4QN19 | |uniprot_id=A4QN18 A4QN19 | ||
}} | }} | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2639 |
|---|---|
| End of the center position in the TSS region: | 2640 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB462505 |
|---|---|
| Distance: | 67 |
| Num_trans: | 5 |
| All_trans: | AB462505:67 BC009316:-101 AK026170:-329 DQ596276:357 DQ593671:-388 |
TATA-Box annotation
| Distance to TSS: | -6414 |
|---|---|
| Nearest PromoterID: | NM_152571 |
| Entrez ID: | 158055 |
| Nearest Unigene: | Hs.212613 |
| Nearest Refseq: | NM_152571 |
| Nearest Ensembl: | |
| Gene Name: | C9orf163 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 163 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
