Difference between revisions of "TSS:Hg 243675.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK290849:-64 AF062347:81 |chr=chr9 |cpg_percent=0 |distance=-64 |distance_to_tss=915 |end=72363677 |entrez_id=7763 |gc_percent=0.323383 |gene_alias=ZA20...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ZFAND5A= | ||
| + | |ZNF216= | ||
|all_trans=AK290849:-64 AF062347:81 | |all_trans=AK290849:-64 AF062347:81 | ||
| − | |chr= | + | |chr=chrX |
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=879 |
| − | |end= | + | |end=111410088 |
| + | |end_of_center_position=111410079 | ||
|entrez_id=7763 | |entrez_id=7763 | ||
|gc_percent=0.323383 | |gc_percent=0.323383 | ||
| − | |gene_alias=ZA20D2 | + | |gene_alias=ZA20D2{{!}}ZFAND5A{{!}}ZNF216 |
|gene_description=zinc finger AN1-type containing 5 | |gene_description=zinc finger AN1-type containing 5 | ||
|gene_id=7763 | |gene_id=7763 | ||
| − | |gene_name= | + | |gene_name=ZFAND5 |
|gene_source=HGNC:13008 | |gene_source=HGNC:13008 | ||
|gene_symbol=ZFAND5 | |gene_symbol=ZFAND5 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_006007 | |nearest_refseq=NM_006007 | ||
|nearest_unigene=Hs.406096 | |nearest_unigene=Hs.406096 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=111410069 |
| − | |strand= | + | |start_of_center_position=111410078 |
| − | |tata_box= | + | |strand=+ |
| − | |transcript_name= | + | |tata_box=-71(TTTTTTAAAGAG,+,0.00),71(GCCCTGAAAAGG,-,0.00),83(AGCCTTTAAAAG,-,0.00),84(GCCTTTAAAAGT,-,0.00),85(CCTTTAAAAGTC,+,0.00) |
| − | |tss_classification= | + | |transcript_name= |
| + | |tss_classification=no | ||
|tss_id=hg_243675.1 | |tss_id=hg_243675.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:55, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111410078 |
|---|---|
| End of the center position in the TSS region: | 111410079 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | AK290849:-64 AF062347:81 |
TATA-Box annotation
| Distance to TSS: | 879 |
|---|---|
| Nearest PromoterID: | NM_001278243 |
| Entrez ID: | 7763 |
| Nearest Unigene: | Hs.406096 |
| Nearest Refseq: | NM_006007 |
| Nearest Ensembl: | ENSG00000107372 |
| Gene Name: | ZFAND5 |
| Gene Alias: | ZA20D2|ZFAND5A|ZNF216 |
| Gene Description: | zinc finger AN1-type containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -71(TTTTTTAAAGAG,+,0.00),71(GCCCTGAAAAGG,-,0.00),83(AGCCTTTAAAAG,-,0.00),84(GCCTTTAAAAGT,-,0.00),85(CCTTTAAAAGTC,+,0.00) |
