Difference between revisions of "TSS:Hg 243738.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |HPE7= | ||
| + | |NBCCS= | ||
| + | |PTC= | ||
| + | |PTC1= | ||
| + | |PTCH= | ||
| + | |PTCH11= | ||
|all_trans=ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 | |all_trans=ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 | ||
| − | |chr= | + | |chr=chrX |
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=10 | |distance_to_tss=10 | ||
| − | |end= | + | |end=12977064 |
| + | |end_of_center_position=12977062 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| − | |gene_name= | + | |gene_name=PTCH1 |
|gene_source=HGNC:9585 | |gene_source=HGNC:9585 | ||
|gene_symbol=PTCH1 | |gene_symbol=PTCH1 | ||
| Line 21: | Line 28: | ||
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
| − | |start= | + | |start=12977058 |
| + | |start_of_center_position=12977061 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name= |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_243738.1 | |tss_id=hg_243738.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A0C4DGI4 Q13635 Q59FG5 | |uniprot_id=A0A0C4DGI4 Q13635 Q59FG5 | ||
}} | }} | ||
Latest revision as of 12:57, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 12977061 |
|---|---|
| End of the center position in the TSS region: | 12977062 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000418258.5:-10 ENST00000553011.5:-10 NM_001083607:-10 uc010mro.4:-10 uc064ums.1:-10 AB189440:-10 ENST00000551845.5:-77 uc064umt.1:-77 ENST00000429896.6:-228 NM_001083606:-228 uc010mrp.4:-228 U43148:-228 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001083607 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
