Difference between revisions of "Release notes"
From referenceTSS
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| − | The latest version of the refTSS dataset is [http://reftss | + | The latest version of the refTSS dataset is [http://reftss.riken.jp/datafiles/3.3/ v3.3]. |
| + | == [http://reftss.riken.jp/datafiles/3.3/ v3.3] (2021-8-19) == | ||
| + | The release is for a bug fix. In the pervious release, the file format of TATA-box annotation files were unintentionally changed. It is fixed to be the same columns as ones in v3.1. | ||
| − | == v3.2 (2021-7-21) == | + | * Fixed the format of TATA-box annotation |
| − | * Updated TSS annotation based on the latest public | + | |
| + | == [http://reftss.riken.jp/datafiles/3.2/ v3.2] (2021-7-21) == | ||
| + | The release is for minor updates, in which several annotation files are updated based on the latest public resources, and add a new data object for easily handling the refTSS data in the R environment. | ||
| + | |||
| + | * Updated TSS annotation based on the latest public annotation sources | ||
* Updated TATA-box annotation | * Updated TATA-box annotation | ||
* Updated HOMER annotation | * Updated HOMER annotation | ||
* Added R data format (RDS) file | * Added R data format (RDS) file | ||
| − | == v3.1 (2019-04-20) == | + | == [http://reftss.riken.jp/datafiles/3.1/ v3.1] (2019-04-20) == |
| − | * Updated TSS annotation based on the latest public | + | The release is for minor updates, in which several annotation files are updated based on the latest public resources, and add a new columns in the TSS positions (BED files). |
| + | |||
| + | * Updated TSS annotation based on the latest public annotation sources | ||
* Updated Regulatory Build annotation based on the latest one | * Updated Regulatory Build annotation based on the latest one | ||
| − | * Add center positions of TSS regions in the coordination files | + | * Add center positions of TSS regions in the coordination BED files |
| + | |||
| + | == [http://reftss.riken.jp/datafiles/3.0/ v3.0] (2018-12-31) == | ||
| + | The release is for major updates. We revised the TSS sets both in human and mouse for filtering out unreliable TSSs. Based on the revised TSS sets, we updated the annotation files. | ||
| − | |||
* Removed unnecessary and problematic samples in the source data, and rebuilt an integrated TSS peak set (human) | * Removed unnecessary and problematic samples in the source data, and rebuilt an integrated TSS peak set (human) | ||
* Revised analysis results based on the above rebuild TSS peak set | * Revised analysis results based on the above rebuild TSS peak set | ||
Latest revision as of 11:31, 24 January 2022
The latest version of the refTSS dataset is v3.3.
v3.3 (2021-8-19)
The release is for a bug fix. In the pervious release, the file format of TATA-box annotation files were unintentionally changed. It is fixed to be the same columns as ones in v3.1.
- Fixed the format of TATA-box annotation
v3.2 (2021-7-21)
The release is for minor updates, in which several annotation files are updated based on the latest public resources, and add a new data object for easily handling the refTSS data in the R environment.
- Updated TSS annotation based on the latest public annotation sources
- Updated TATA-box annotation
- Updated HOMER annotation
- Added R data format (RDS) file
v3.1 (2019-04-20)
The release is for minor updates, in which several annotation files are updated based on the latest public resources, and add a new columns in the TSS positions (BED files).
- Updated TSS annotation based on the latest public annotation sources
- Updated Regulatory Build annotation based on the latest one
- Add center positions of TSS regions in the coordination BED files
v3.0 (2018-12-31)
The release is for major updates. We revised the TSS sets both in human and mouse for filtering out unreliable TSSs. Based on the revised TSS sets, we updated the annotation files.
- Removed unnecessary and problematic samples in the source data, and rebuilt an integrated TSS peak set (human)
- Revised analysis results based on the above rebuild TSS peak set
- Removed CNE results
- Added Regulatory build analysis result
- Revised annotation based on the latest annotation sources
