Difference between revisions of "TSS:Hg 101402.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |HSN1= | ||
| + | |LBC1= | ||
| + | |LCB1= | ||
| + | |SPT1= | ||
| + | |SPTI= | ||
| + | |all_trans=LF331663:43 MA567240:43 ENST00000469778.1:-117 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance_to_tss= | + | |distance=43 |
| + | |distance_to_tss=77074 | ||
| + | |end=92038341 | ||
| + | |end_of_center_position=92038340 | ||
|entrez_id=10558 | |entrez_id=10558 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=HSAN1 | + | |gene_alias=HSAN1{{!}}HSN1{{!}}LBC1{{!}}LCB1{{!}}SPT1{{!}}SPTI |
|gene_description=serine palmitoyltransferase long chain base subunit 1 | |gene_description=serine palmitoyltransferase long chain base subunit 1 | ||
| + | |gene_id=10558 | ||
|gene_name=SPTLC1 | |gene_name=SPTLC1 | ||
| + | |gene_source=HGNC:11277 | ||
| + | |gene_symbol=SPTLC1 | ||
| + | |gene_synonyms=HSAN1 LCB1 SPTI hLCB1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11277 | ||
|nearest_ensembl=ENSG00000090054 | |nearest_ensembl=ENSG00000090054 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368273 |
|nearest_refseq=NM_006415 | |nearest_refseq=NM_006415 | ||
|nearest_unigene=Hs.90458 | |nearest_unigene=Hs.90458 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=92038337 | ||
| + | |start_of_center_position=92038339 | ||
| + | |strand=- | ||
| + | |transcript_name=LF331663 MA567240 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101402.1 | |tss_id=hg_101402.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 16:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92038339 |
|---|---|
| End of the center position in the TSS region: | 92038340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF331663 MA567240 |
|---|---|
| Distance: | 43 |
| Num_trans: | 3 |
| All_trans: | LF331663:43 MA567240:43 ENST00000469778.1:-117 |
TATA-Box annotation
| Distance to TSS: | 77074 |
|---|---|
| Nearest PromoterID: | NM_001368273 |
| Entrez ID: | 10558 |
| Nearest Unigene: | Hs.90458 |
| Nearest Refseq: | NM_006415 |
| Nearest Ensembl: | ENSG00000090054 |
| Gene Name: | SPTLC1 |
| Gene Alias: | HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI |
| Gene Description: | serine palmitoyltransferase long chain base subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
