Difference between revisions of "TSS:Hg 46193.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:48574 |
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
|end=194312811 | |end=194312811 | ||
| + | |end_of_center_position=194312800 | ||
|entrez_id=100131551 | |entrez_id=100131551 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| Line 14: | Line 15: | ||
|gene_source=HGNC:48574 | |gene_source=HGNC:48574 | ||
|gene_symbol=LINC00887 | |gene_symbol=LINC00887 | ||
| − | |gene_synonyms=linc-ATP13A4-8 | + | |gene_synonyms=HEIRCC linc-ATP13A4-8 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:48574 | |hgnc_mgi_id=HGNC:48574 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_024480 | |nearest_refseq=NR_024480 | ||
|nearest_unigene=Hs.128066 | |nearest_unigene=Hs.128066 | ||
| − | |num_trans= | + | |num_trans=100131551 |
|species=human | |species=human | ||
|start=194312788 | |start=194312788 | ||
| + | |start_of_center_position=194312799 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000429578.5 ENST00000414120 | + | |transcript_name=ENST00000456816.6 ENST00000429578.5 ENST00000414120.1 AK054628 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_46193.1 | |tss_id=hg_46193.1 | ||
Latest revision as of 23:16, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 194312799 |
|---|---|
| End of the center position in the TSS region: | 194312800 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000456816.6 ENST00000429578.5 ENST00000414120.1 AK054628 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100131551 |
| All_trans: | HGNC:48574 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NR_024480 |
| Entrez ID: | 100131551 |
| Nearest Unigene: | Hs.128066 |
| Nearest Refseq: | NR_024480 |
| Nearest Ensembl: | ENSG00000214145 |
| Gene Name: | long intergenic non-protein coding RNA 887 |
| Gene Alias: | HEIRCC |
| Gene Description: | long intergenic non-protein coding RNA 887 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
