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Difference between revisions of "TSS:Hg 52022.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000515082.5:-97 uc003gxe.3:-97 BC022488:-97 ENST00000540012.5:235 NM_000807:235 NM_001286827:235 uc062wim.1:235 ENST00000381620.8:346 uc010igc.4:3...")
 
 
(2 intermediate revisions by the same user not shown)
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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000515082.5:-97 uc003gxe.3:-97 BC022488:-97 ENST00000540012.5:235 NM_000807:235 NM_001286827:235 uc062wim.1:235 ENST00000381620.8:346 uc010igc.4:346 S62907:346 ENST00000630416.2:486 ENST00000514193.5:486 uc062wil.1:486 uc062wir.1:486 AK293466:486
+
|all_trans=NM_001377154:0 NM_001377146:0 NM_001377145:0 NM_001377155:0 ENST00000515082.5:-97 BC022488:-97 ENST00000381620.9:146 NM_000807:146 NM_001377152:146 NM_001377144:146 NM_001286827:146 ENST00000540012.5:235 S62907:346 ENST00000630416.2:486 ENST00000514193.5:486 AK293466:486
 
|chr=chr4
 
|chr=chr4
 
|cpg_percent=0.115
 
|cpg_percent=0.115
|distance=-97
+
|distance=0
|distance_to_tss=-222
+
|distance_to_tss=-162
 
|end=46390307
 
|end=46390307
 +
|end_of_center_position=46390291
 
|entrez_id=2555
 
|entrez_id=2555
 
|gc_percent=0.761194
 
|gc_percent=0.761194
Line 11: Line 12:
 
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit
 
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit
 
|gene_id=2555
 
|gene_id=2555
|gene_name=gamma-aminobutyric acid type A receptor alpha2 subunit
+
|gene_name=gamma-aminobutyric acid type A receptor subunit alpha2
 
|gene_source=HGNC:4076
 
|gene_source=HGNC:4076
 
|gene_symbol=GABRA2
 
|gene_symbol=GABRA2
Line 21: Line 22:
 
|nearest_refseq=NM_000807
 
|nearest_refseq=NM_000807
 
|nearest_unigene=Hs.48372
 
|nearest_unigene=Hs.48372
|num_trans=15
+
|num_trans=16
 
|species=human
 
|species=human
 
|start=46390273
 
|start=46390273
 +
|start_of_center_position=46390290
 
|strand=-
 
|strand=-
|transcript_name=ENST00000515082.5 uc003gxe.3 BC022488
+
|transcript_name=NM_001377145.1 NM_001377146.1 NM_001377154.1 NM_001377155.1
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_52022.1
 
|tss_id=hg_52022.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=G5E9Z6 Q8TBI4
+
|uniprot_id=
 
}}
 
}}

Latest revision as of 01:22, 22 July 2021

Basic information about the TSS


TSS ID:hg_52022.1
Species:human
Chr:chr4
TSS Classification:yes
Start:46390273
End:46390307
Strand:-
TSS Score:1
Start of the center position in the TSS region:46390290
End of the center position in the TSS region:46390291



Gene and protein annotation


Transcript_name:NM_001377145.1 NM_001377146.1 NM_001377154.1 NM_001377155.1
Distance:0
GeneID:2555
HGNC/MGI_ID:HGNC:4076
UniProt_ID:
Gene_name:gamma-aminobutyric acid type A receptor subunit alpha2
Gene_symbol:GABRA2
Gene_synonyms:
Gene_source:HGNC:4076



Transcript annotation


Transcript_name:NM_001377145.1 NM_001377146.1 NM_001377154.1 NM_001377155.1
Distance:0
Num_trans:16
All_trans:NM_001377154:0 NM_001377146:0 NM_001377145:0 NM_001377155:0 ENST00000515082.5:-97 BC022488:-97 ENST00000381620.9:146 NM_000807:146 NM_001377152:146 NM_001377144:146 NM_001286827:146 ENST00000540012.5:235 S62907:346 ENST00000630416.2:486 ENST00000514193.5:486 AK293466:486



TATA-Box annotation


Distance to TSS:-162
Nearest PromoterID:NM_000807
Entrez ID:2555
Nearest Unigene:Hs.48372
Nearest Refseq:NM_000807
Nearest Ensembl:ENSG00000151834
Gene Name:gamma-aminobutyric acid type A receptor subunit alpha2
Gene Alias:-
Gene Description:gamma-aminobutyric acid type A receptor alpha2 subunit
Gene Type:protein-coding
CpG%:0.115
GC%:0.761194
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):