Difference between revisions of "TSS:Hg 52022.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000515082.5:-97 uc003gxe.3:-97 BC022488:-97 ENST00000540012.5:235 NM_000807:235 NM_001286827:235 uc062wim.1:235 ENST00000381620.8:346 uc010igc.4:3...") |
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{{TSSDetail | {{TSSDetail | ||
− | |all_trans=ENST00000515082.5 | + | |all_trans=NM_001377154:0 NM_001377146:0 NM_001377145:0 NM_001377155:0 ENST00000515082.5:-97 BC022488:-97 ENST00000381620.9:146 NM_000807:146 NM_001377152:146 NM_001377144:146 NM_001286827:146 ENST00000540012.5:235 S62907:346 ENST00000630416.2:486 ENST00000514193.5:486 AK293466:486 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
− | |distance= | + | |distance=0 |
− | |distance_to_tss=- | + | |distance_to_tss=-162 |
|end=46390307 | |end=46390307 | ||
+ | |end_of_center_position=46390291 | ||
|entrez_id=2555 | |entrez_id=2555 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
Line 11: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
− | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
Line 21: | Line 22: | ||
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
− | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=46390273 | |start=46390273 | ||
+ | |start_of_center_position=46390290 | ||
|strand=- | |strand=- | ||
− | |transcript_name= | + | |transcript_name=NM_001377145.1 NM_001377146.1 NM_001377154.1 NM_001377155.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52022.1 | |tss_id=hg_52022.1 | ||
|tss_score=1 | |tss_score=1 | ||
− | |uniprot_id= | + | |uniprot_id= |
}} | }} |
Latest revision as of 01:22, 22 July 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 46390290 |
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End of the center position in the TSS region: | 46390291 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | NM_001377145.1 NM_001377146.1 NM_001377154.1 NM_001377155.1 |
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Distance: | 0 |
Num_trans: | 16 |
All_trans: | NM_001377154:0 NM_001377146:0 NM_001377145:0 NM_001377155:0 ENST00000515082.5:-97 BC022488:-97 ENST00000381620.9:146 NM_000807:146 NM_001377152:146 NM_001377144:146 NM_001286827:146 ENST00000540012.5:235 S62907:346 ENST00000630416.2:486 ENST00000514193.5:486 AK293466:486 |
TATA-Box annotation
Distance to TSS: | -162 |
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Nearest PromoterID: | NM_000807 |
Entrez ID: | 2555 |
Nearest Unigene: | Hs.48372 |
Nearest Refseq: | NM_000807 |
Nearest Ensembl: | ENSG00000151834 |
Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
Gene Alias: | - |
Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
Gene Type: | protein-coding |
CpG%: | 0.115 |
GC%: | 0.761194 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |