Difference between revisions of "TSS:Hg 623.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |FBX30= |
| + | |FBX6A= | ||
| + | |Fbx44= | ||
| + | |Fbxo6a= | ||
| + | |all_trans=NM_001304791:0 NM_183412:0 ENST00000251546.8:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NR_130909:432 NM_001304790:432 NM_001330355:432 NM_001014765:432 NM_183413:432 CR749368:444 ENST00000251547.10:452 NM_033182:452 AK296025:452 AK301418:452 AK316284:452 ENST00000376768.5:456 AK316347:475 AY040878:476 AK293721:484 ENST00000376760.5:485 ENST00000376762.8:485 BC007832:485 AK294053:500 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=11654425 | |end=11654425 | ||
| + | |end_of_center_position=11654414 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=93611 | |gene_id=93611 | ||
| Line 18: | Line 23: | ||
|hgnc_mgi_id=HGNC:24847 | |hgnc_mgi_id=HGNC:24847 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_183412 |
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=11654401 | |start=11654401 | ||
| + | |start_of_center_position=11654413 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_183412.3 NM_001304791.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_623.1 | |tss_id=hg_623.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9H4M3 |
}} | }} | ||
Latest revision as of 05:06, 22 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654413 |
|---|---|
| End of the center position in the TSS region: | 11654414 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_183412.3 NM_001304791.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | NM_001304791:0 NM_183412:0 ENST00000251546.8:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NR_130909:432 NM_001304790:432 NM_001330355:432 NM_001014765:432 NM_183413:432 CR749368:444 ENST00000251547.10:452 NM_033182:452 AK296025:452 AK301418:452 AK316284:452 ENST00000376768.5:456 AK316347:475 AY040878:476 AK293721:484 ENST00000376760.5:485 ENST00000376762.8:485 BC007832:485 AK294053:500 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_183412 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 44 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00) |
