Difference between revisions of "TSS:Hg 70898.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001302841:-11 NM_001302840:-11 NM_001302839:-11 ENST00000367072.4:59 uc063soc.1:59 ENST00000367073.5:289 uc063sod.1:289 |chr=chr6 |cpg_percent=0.115...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:21179 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-11 | |distance=-11 | ||
| − | |distance_to_tss= | + | |distance_to_tss=65 |
|end=158869880 | |end=158869880 | ||
| + | |end_of_center_position=158869879 | ||
|entrez_id=100130967 | |entrez_id=100130967 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=chromosome 6 open reading frame 99 | |gene_description=chromosome 6 open reading frame 99 | ||
|gene_id=100130967 | |gene_id=100130967 | ||
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 2901 |
|gene_source=HGNC:21179 | |gene_source=HGNC:21179 | ||
| − | |gene_symbol= | + | |gene_symbol=LINC02901 |
|gene_synonyms=yR211F11.1 | |gene_synonyms=yR211F11.1 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:21179 | |hgnc_mgi_id=HGNC:21179 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_160978 |
|nearest_refseq=NM_001195032 | |nearest_refseq=NM_001195032 | ||
|nearest_unigene=Hs.32804 | |nearest_unigene=Hs.32804 | ||
| − | |num_trans= | + | |num_trans=100130967 |
|species=human | |species=human | ||
|start=158869877 | |start=158869877 | ||
| + | |start_of_center_position=158869878 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-100(CGCCATATAAAA,-,0.00),-98(CCATATAAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000663950.1 ENST00000655791.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_70898.1 | |tss_id=hg_70898.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 08:12, 22 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 158869878 |
|---|---|
| End of the center position in the TSS region: | 158869879 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000663950.1 ENST00000655791.1 |
|---|---|
| Distance: | -11 |
| Num_trans: | 100130967 |
| All_trans: | HGNC:21179 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NR_160978 |
| Entrez ID: | 100130967 |
| Nearest Unigene: | Hs.32804 |
| Nearest Refseq: | NM_001195032 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 2901 |
| Gene Alias: | - |
| Gene Description: | chromosome 6 open reading frame 99 |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -100(CGCCATATAAAA,-,0.00),-98(CCATATAAAAGC,-,0.00) |
