Difference between revisions of "TSS:Hg 101808.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |ABC1= | ||
| + | |CERP= | ||
| + | |HDLDT1= | ||
| + | |TGD= | ||
| + | |all_trans=HGNC:29 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=1 | ||
| + | |end=104928161 | ||
| + | |end_of_center_position=104928155 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=ABC-1 | + | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD |
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
| − | |gene_name=ABCA1 | + | |gene_id=19 |
| + | |gene_name=ATP binding cassette subfamily A member 1 | ||
| + | |gene_source=HGNC:29 | ||
| + | |gene_symbol=ABCA1 | ||
| + | |gene_synonyms=TGD | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29 | ||
|nearest_ensembl=ENSG00000165029 | |nearest_ensembl=ENSG00000165029 | ||
|nearest_promoter_id=NM_005502 | |nearest_promoter_id=NM_005502 | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| − | |tata_box= | + | |num_trans=19 |
| + | |species=human | ||
| + | |start=104928147 | ||
| + | |start_of_center_position=104928154 | ||
| + | |strand=- | ||
| + | |tata_box=-35(ATCTATAAAAGG,-,0.00) | ||
| + | |transcript_name=ENST00000374736.8 ENST00000678995.1 AK024328 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101808.1 | |tss_id=hg_101808.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O95477 | ||
}} | }} | ||
Latest revision as of 18:13, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 104928154 |
|---|---|
| End of the center position in the TSS region: | 104928155 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374736.8 ENST00000678995.1 AK024328 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | HGNC:29 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ATP binding cassette subfamily A member 1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(ATCTATAAAAGG,-,0.00) |
