Difference between revisions of "TSS:Hg 78882.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001287060:-19 NR_104676:-19 ENST00000607882.5:20 uc064eak.1:20 AK056864:20 |chr=chr7 |cpg_percent=0.12 |distance=-19 |distance_to_tss=36 |end=6668214...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |RAP1= |
| + | |all_trans=HGNC:17676 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=20 |
| − | |distance_to_tss= | + | |distance_to_tss=-39 |
|end=66682144 | |end=66682144 | ||
| + | |end_of_center_position=66682127 | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
|gene_id=27342 | |gene_id=27342 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=HGNC:17676 | |hgnc_mgi_id=HGNC:17676 | ||
|nearest_ensembl=ENSG00000154710 | |nearest_ensembl=ENSG00000154710 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367732 |
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans=5 | + | |num_trans=27342 |
| + | |rabex-5= | ||
|species=human | |species=human | ||
|start=66682109 | |start=66682109 | ||
| + | |start_of_center_position=66682126 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000607882.5 AK056864 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_78882.1 | |tss_id=hg_78882.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=V9GYI8 |
}} | }} | ||
Latest revision as of 11:05, 22 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 66682126 |
|---|---|
| End of the center position in the TSS region: | 66682127 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000607882.5 AK056864 |
|---|---|
| Distance: | 20 |
| Num_trans: | 27342 |
| All_trans: | HGNC:17676 |
TATA-Box annotation
| Distance to TSS: | -39 |
|---|---|
| Nearest PromoterID: | NM_001367732 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | RAB guanine nucleotide exchange factor 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
