Difference between revisions of "TSS:Hg 8805.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000272133.3:187 uc001hos.2:187 NM_152495:371 AK096312:371 |chr=chr1 |cpg_percent=0.09 |distance=187 |distance_to_tss=-375 |end=224616106 |entrez_i...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:26802 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=211 |
| − | |distance_to_tss=- | + | |distance_to_tss=-215 |
|end=224616106 | |end=224616106 | ||
| + | |end_of_center_position=224616102 | ||
|entrez_id=149111 | |entrez_id=149111 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:26802 | |hgnc_mgi_id=HGNC:26802 | ||
|nearest_ensembl=ENSG00000143786 | |nearest_ensembl=ENSG00000143786 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152495 |
|nearest_refseq=NM_152495 | |nearest_refseq=NM_152495 | ||
|nearest_unigene=Hs.731723 | |nearest_unigene=Hs.731723 | ||
| − | |num_trans= | + | |num_trans=149111 |
|species=human | |species=human | ||
|start=224616097 | |start=224616097 | ||
| + | |start_of_center_position=224616101 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-66(GTGTTTAAAGAG,-,0.00) |
| − | |transcript_name=ENST00000272133. | + | |transcript_name=ENST00000272133.4 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_8805.1 | |tss_id=hg_8805.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8TBE1 | |uniprot_id=Q8TBE1 | ||
}} | }} | ||
Latest revision as of 14:23, 22 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 224616101 |
|---|---|
| End of the center position in the TSS region: | 224616102 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000272133.4 |
|---|---|
| Distance: | 211 |
| Num_trans: | 149111 |
| All_trans: | HGNC:26802 |
TATA-Box annotation
| Distance to TSS: | -215 |
|---|---|
| Nearest PromoterID: | NM_152495 |
| Entrez ID: | 149111 |
| Nearest Unigene: | Hs.731723 |
| Nearest Refseq: | NM_152495 |
| Nearest Ensembl: | ENSG00000143786 |
| Gene Name: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Alias: | CNIH-3 |
| Gene Description: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -66(GTGTTTAAAGAG,-,0.00) |
