Difference between revisions of "TSS:Hg 88590.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000523755.5:81 uc064mfr.1:81 ENST00000524117.1:125 uc064mfs.1:125 |chr=chr8 |cpg_percent=0.01 |distance=81 |distance_to_tss=100475 |end=39685049 |...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:196 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=100475 | |distance_to_tss=100475 | ||
|end=39685049 | |end=39685049 | ||
| + | |end_of_center_position=39685043 | ||
|entrez_id=8749 | |entrez_id=8749 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=ADAM27 | + | |gene_alias=ADAM27{{!}}tMDCIII |
|gene_description=ADAM metallopeptidase domain 18 | |gene_description=ADAM metallopeptidase domain 18 | ||
|gene_id=8749 | |gene_id=8749 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:196 | |hgnc_mgi_id=HGNC:196 | ||
|nearest_ensembl=ENSG00000168619 | |nearest_ensembl=ENSG00000168619 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320313 |
|nearest_refseq=NM_014237 | |nearest_refseq=NM_014237 | ||
|nearest_unigene=Hs.127930 | |nearest_unigene=Hs.127930 | ||
| − | |num_trans= | + | |num_trans=8749 |
|species=human | |species=human | ||
|start=39685036 | |start=39685036 | ||
| + | |start_of_center_position=39685042 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tMDCIII= |
| − | |transcript_name=ENST00000523755.5 | + | |tata_box=-28(GCCCTTAAAAGG,-,0.00),-27(CCCTTAAAAGGG,+,0.00),-26(CCTTAAAAGGGA,+,0.00) |
| + | |transcript_name=ENST00000523755.5 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_88590.1 | |tss_id=hg_88590.1 | ||
Latest revision as of 14:34, 22 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 39685042 |
|---|---|
| End of the center position in the TSS region: | 39685043 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000523755.5 |
|---|---|
| Distance: | 81 |
| Num_trans: | 8749 |
| All_trans: | HGNC:196 |
TATA-Box annotation
| Distance to TSS: | 100475 |
|---|---|
| Nearest PromoterID: | NM_001320313 |
| Entrez ID: | 8749 |
| Nearest Unigene: | Hs.127930 |
| Nearest Refseq: | NM_014237 |
| Nearest Ensembl: | ENSG00000168619 |
| Gene Name: | ADAM metallopeptidase domain 18 |
| Gene Alias: | ADAM27|tMDCIII |
| Gene Description: | ADAM metallopeptidase domain 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -28(GCCCTTAAAAGG,-,0.00),-27(CCCTTAAAAGGG,+,0.00),-26(CCTTAAAAGGGA,+,0.00) |
