Difference between revisions of "TSS:Hg 92907.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |GLVR2= |
| + | |IBGC1= | ||
| + | |IBGC3= | ||
| + | |MLVAR= | ||
| + | |PIT-2= | ||
| + | |PIT2= | ||
| + | |RAM1= | ||
| + | |Ram-1= | ||
| + | |all_trans=LF371616:114 MA607193:114 ENST00000520262.6:-128 NM_001257180:-128 ENST00000517366.1:-140 AK291202:-357 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=114 |
| − | |distance_to_tss= | + | |distance_to_tss=133 |
|end=42501103 | |end=42501103 | ||
| + | |end_of_center_position=42501098 | ||
|entrez_id=6575 | |entrez_id=6575 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=GLVR-2 | + | |gene_alias=GLVR-2{{!}}GLVR2{{!}}IBGC1{{!}}IBGC3{{!}}MLVAR{{!}}PIT-2{{!}}PIT2{{!}}RAM1{{!}}Ram-1 |
|gene_description=solute carrier family 20 member 2 | |gene_description=solute carrier family 20 member 2 | ||
|gene_id=6575 | |gene_id=6575 | ||
| − | |gene_name= | + | |gene_name=SLC20A2 |
|gene_source=HGNC:10947 | |gene_source=HGNC:10947 | ||
|gene_symbol=SLC20A2 | |gene_symbol=SLC20A2 | ||
| Line 24: | Line 33: | ||
|species=human | |species=human | ||
|start=42501092 | |start=42501092 | ||
| + | |start_of_center_position=42501097 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF371616 MA607193 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_92907.1 | |tss_id=hg_92907.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=E5RGJ6 | |uniprot_id=E5RGJ6 | ||
}} | }} | ||
Latest revision as of 12:17, 15 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42501097 |
|---|---|
| End of the center position in the TSS region: | 42501098 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF371616 MA607193 |
|---|---|
| Distance: | 114 |
| Num_trans: | 6 |
| All_trans: | LF371616:114 MA607193:114 ENST00000520262.6:-128 NM_001257180:-128 ENST00000517366.1:-140 AK291202:-357 |
TATA-Box annotation
| Distance to TSS: | 133 |
|---|---|
| Nearest PromoterID: | NM_001257180 |
| Entrez ID: | 6575 |
| Nearest Unigene: | Hs.653173 |
| Nearest Refseq: | NM_006749 |
| Nearest Ensembl: | ENSG00000168575 |
| Gene Name: | SLC20A2 |
| Gene Alias: | GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 |
| Gene Description: | solute carrier family 20 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
