Difference between revisions of "TSS:Mm 100066.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK051090:-2 |chr=chr11 |cpg_percent=0 |distance=-2 |distance_to_tss=-9113 |end=115394642 |entrez_id=68572 |gc_percent=0.462687 |gene_alias=1110001A02Rik...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |1110002E03Rik= |
| + | |Ict1= | ||
| + | |MRP-L58= | ||
| + | |all_trans=MGI:2684867 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=-9113 | |distance_to_tss=-9113 | ||
|end=115394642 | |end=115394642 | ||
| + | |end_of_center_position=115394640 | ||
|entrez_id=68572 | |entrez_id=68572 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=1110001A02Rik | + | |gene_alias=1110001A02Rik{{!}}1110002E03Rik{{!}}Ict1{{!}}MRP-L58 |
|gene_description=mitochondrial ribosomal protein L58 | |gene_description=mitochondrial ribosomal protein L58 | ||
|gene_id=237988 | |gene_id=237988 | ||
| Line 18: | Line 22: | ||
|hgnc_mgi_id=MGI:2684867 | |hgnc_mgi_id=MGI:2684867 | ||
|nearest_ensembl=ENSMUSG00000018858 | |nearest_ensembl=ENSMUSG00000018858 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_026729 |
|nearest_refseq=NM_026729 | |nearest_refseq=NM_026729 | ||
|nearest_unigene=Mm.271062 | |nearest_unigene=Mm.271062 | ||
| − | |num_trans= | + | |num_trans=237988 |
|species=mouse | |species=mouse | ||
|start=115394636 | |start=115394636 | ||
| + | |start_of_center_position=115394639 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AK051090 | |transcript_name=AK051090 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100066.1 | |tss_id=mm_100066.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:30, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115394639 |
|---|---|
| End of the center position in the TSS region: | 115394640 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK051090 |
|---|---|
| Distance: | -2 |
| Num_trans: | 237988 |
| All_trans: | MGI:2684867 |
TATA-Box annotation
| Distance to TSS: | -9113 |
|---|---|
| Nearest PromoterID: | NM_026729 |
| Entrez ID: | 68572 |
| Nearest Unigene: | Mm.271062 |
| Nearest Refseq: | NM_026729 |
| Nearest Ensembl: | ENSMUSG00000018858 |
| Gene Name: | cerebellar degeneration-related protein 2-like |
| Gene Alias: | 1110001A02Rik|1110002E03Rik|Ict1|MRP-L58 |
| Gene Description: | mitochondrial ribosomal protein L58 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
