Difference between revisions of "TSS:Mm 100074.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_001080934:93 | + | |MCT 5= |
| + | |MCT 6= | ||
| + | |MCT5= | ||
| + | |all_trans=NM_001080934:93 ENSMUST00000106532.3:94 NM_001359606:94 NM_001359608:94 AK079757:94 ENSMUST00000092445.11:98 ENSMUST00000153466.1:126 BC172170:181 ENSMUST00000125251.7:184 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=-96 | |distance_to_tss=-96 | ||
|end=115462380 | |end=115462380 | ||
| + | |end_of_center_position=115462377 | ||
|entrez_id=217316 | |entrez_id=217316 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=A130015N09Rik | + | |gene_alias=A130015N09Rik{{!}}MCT 5{{!}}MCT 6{{!}}MCT5 |
| − | |gene_description= | + | |gene_description=solute carrier family 16 (monocarboxylic acid transporters), member 5 |
|gene_id=217316 | |gene_id=217316 | ||
| − | |gene_name= | + | |gene_name=solute carrier family 16 (monocarboxylic acid transporters), member 5 |
|gene_source=MGI:2443515 | |gene_source=MGI:2443515 | ||
|gene_symbol=Slc16a5 | |gene_symbol=Slc16a5 | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_001080934 | |nearest_refseq=NM_001080934 | ||
|nearest_unigene=Mm.25773 | |nearest_unigene=Mm.25773 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=115462373 | |start=115462373 | ||
| + | |start_of_center_position=115462376 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001080934 | + | |transcript_name=NM_001080934.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100074.1 | |tss_id=mm_100074.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=G5E8K6 |
}} | }} | ||
Latest revision as of 10:30, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115462376 |
|---|---|
| End of the center position in the TSS region: | 115462377 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001080934.1 |
|---|---|
| Distance: | 93 |
| Num_trans: | 9 |
| All_trans: | NM_001080934:93 ENSMUST00000106532.3:94 NM_001359606:94 NM_001359608:94 AK079757:94 ENSMUST00000092445.11:98 ENSMUST00000153466.1:126 BC172170:181 ENSMUST00000125251.7:184 |
TATA-Box annotation
| Distance to TSS: | -96 |
|---|---|
| Nearest PromoterID: | NM_001080934 |
| Entrez ID: | 217316 |
| Nearest Unigene: | Mm.25773 |
| Nearest Refseq: | NM_001080934 |
| Nearest Ensembl: | ENSMUSG00000045775 |
| Gene Name: | solute carrier family 16 (monocarboxylic acid transporters), member 5 |
| Gene Alias: | A130015N09Rik|MCT 5|MCT 6|MCT5 |
| Gene Description: | solute carrier family 16 (monocarboxylic acid transporters), member 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
