Difference between revisions of "TSS:Mm 100313.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |4933424M23Rik= |
| + | |SAF= | ||
| + | |all_trans=MGI:1921701 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=12 | |distance_to_tss=12 | ||
|end=117986899 | |end=117986899 | ||
| + | |end_of_center_position=117986869 | ||
|entrez_id=74451 | |entrez_id=74451 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=2610019F11Rik | + | |gene_alias=2610019F11Rik{{!}}4933424M23Rik{{!}}SAF |
|gene_description=phosphatidylglycerophosphate synthase 1 | |gene_description=phosphatidylglycerophosphate synthase 1 | ||
|gene_id=74451 | |gene_id=74451 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=MGI:1921701 | |hgnc_mgi_id=MGI:1921701 | ||
|nearest_ensembl=ENSMUSG00000017715 | |nearest_ensembl=ENSMUSG00000017715 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_151726 |
|nearest_refseq=NM_133757 | |nearest_refseq=NM_133757 | ||
|nearest_unigene=Mm.28864 | |nearest_unigene=Mm.28864 | ||
| − | |num_trans= | + | |num_trans=74451 |
|species=mouse | |species=mouse | ||
|start=117986838 | |start=117986838 | ||
| + | |start_of_center_position=117986868 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000017859.9 | + | |transcript_name=ENSMUST00000017859.9 AK049359 AK046174 AK053905 AK163967 AK153001 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100313.1 | |tss_id=mm_100313.1 | ||
Latest revision as of 10:35, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 117986868 |
|---|---|
| End of the center position in the TSS region: | 117986869 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000017859.9 AK049359 AK046174 AK053905 AK163967 AK153001 |
|---|---|
| Distance: | 0 |
| Num_trans: | 74451 |
| All_trans: | MGI:1921701 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NR_151726 |
| Entrez ID: | 74451 |
| Nearest Unigene: | Mm.28864 |
| Nearest Refseq: | NM_133757 |
| Nearest Ensembl: | ENSMUSG00000017715 |
| Gene Name: | phosphatidylglycerophosphate synthase 1 |
| Gene Alias: | 2610019F11Rik|4933424M23Rik|SAF |
| Gene Description: | phosphatidylglycerophosphate synthase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
