Difference between revisions of "TSS:Mm 100402.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000093902.11:-292 ENSMUST00000131035.9:-292 AK162348:-323 AK037444:-324 |chr=chr11 |cpg_percent=0.025 |distance=-292 |distance_to_tss=2936 |end...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1289196 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=2936 | |distance_to_tss=2936 | ||
|end=119393425 | |end=119393425 | ||
| + | |end_of_center_position=119393409 | ||
|entrez_id=100316690 | |entrez_id=100316690 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=mir-1932 | + | |gene_alias=mir-1932{{!}}mmu-mir-1932 |
|gene_description=microRNA 1932 | |gene_description=microRNA 1932 | ||
|gene_id=672511 | |gene_id=672511 | ||
| Line 17: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:1289196 | |hgnc_mgi_id=MGI:1289196 | ||
| + | |mmu-mir-1932= | ||
|nearest_ensembl=ENSMUSG00000088015 | |nearest_ensembl=ENSMUSG00000088015 | ||
|nearest_promoter_id=NR_035453 | |nearest_promoter_id=NR_035453 | ||
|nearest_refseq=NR_035453 | |nearest_refseq=NR_035453 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=672511 |
|species=mouse | |species=mouse | ||
|start=119393391 | |start=119393391 | ||
| + | |start_of_center_position=119393408 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-43(CACTTTAAAAGA,-,0.00) |
|transcript_name=ENSMUST00000093902.11 ENSMUST00000131035.9 | |transcript_name=ENSMUST00000093902.11 ENSMUST00000131035.9 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100402.1 | |tss_id=mm_100402.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=E9Q555 | + | |uniprot_id=A0A171EBL2 E9Q555 |
}} | }} | ||
Latest revision as of 10:37, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119393408 |
|---|---|
| End of the center position in the TSS region: | 119393409 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000093902.11 ENSMUST00000131035.9 |
|---|---|
| Distance: | -292 |
| Num_trans: | 672511 |
| All_trans: | MGI:1289196 |
TATA-Box annotation
| Distance to TSS: | 2936 |
|---|---|
| Nearest PromoterID: | NR_035453 |
| Entrez ID: | 100316690 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_035453 |
| Nearest Ensembl: | ENSMUSG00000088015 |
| Gene Name: | ring finger protein 213 |
| Gene Alias: | mir-1932|mmu-mir-1932 |
| Gene Description: | microRNA 1932 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(CACTTTAAAAGA,-,0.00) |
