Difference between revisions of "TSS:Hg 100210.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:5431 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-113 | |distance_to_tss=-113 | ||
|end=21278689 | |end=21278689 | ||
| + | |end_of_center_position=21278677 | ||
|entrez_id=3453 | |entrez_id=3453 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=IFNAP22 | |gene_alias=IFNAP22 | ||
| − | |gene_description= | + | |gene_description=interferon alpha 22, pseudogene |
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=interferon alpha 22, pseudogene |
|gene_source=HGNC:5431 | |gene_source=HGNC:5431 | ||
|gene_symbol=IFNA22P | |gene_symbol=IFNA22P | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_036676 | |nearest_refseq=NR_036676 | ||
|nearest_unigene=Hs.545842 | |nearest_unigene=Hs.545842 | ||
| − | |num_trans= | + | |num_trans= |
|species=human | |species=human | ||
|start=21278663 | |start=21278663 | ||
| + | |start_of_center_position=21278676 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-45(CCCTATTTAAGG,-,0.00) |
|transcript_name=ENST00000458710.2 | |transcript_name=ENST00000458710.2 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:38, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21278676 |
|---|---|
| End of the center position in the TSS region: | 21278677 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000458710.2 |
|---|---|
| Distance: | 45 |
| Num_trans: | |
| All_trans: | HGNC:5431 |
TATA-Box annotation
| Distance to TSS: | -113 |
|---|---|
| Nearest PromoterID: | NR_036676 |
| Entrez ID: | 3453 |
| Nearest Unigene: | Hs.545842 |
| Nearest Refseq: | NR_036676 |
| Nearest Ensembl: | |
| Gene Name: | interferon alpha 22, pseudogene |
| Gene Alias: | IFNAP22 |
| Gene Description: | interferon alpha 22, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -45(CCCTATTTAAGG,-,0.00) |
