Difference between revisions of "TSS:Mm 100700.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1354727 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=44 | |distance_to_tss=44 | ||
|end=3539267 | |end=3539267 | ||
| + | |end_of_center_position=3539248 | ||
|entrez_id=29856 | |entrez_id=29856 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:1354727 | |hgnc_mgi_id=MGI:1354727 | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=29856 |
|species=mouse | |species=mouse | ||
|start=3539228 | |start=3539228 | ||
| + | |start_of_center_position=3539247 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000075118.9 ENSMUST00000154861.7 ENSMUST00000136243.1 ENSMUST00000151804.1 AF064236 AJ010305 AK085412 BC010599 AK166385 AK170516 | |transcript_name=ENSMUST00000075118.9 ENSMUST00000154861.7 ENSMUST00000136243.1 ENSMUST00000151804.1 AF064236 AJ010305 AK085412 BC010599 AK166385 AK170516 | ||
Latest revision as of 10:44, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3539247 |
|---|---|
| End of the center position in the TSS region: | 3539248 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000075118.9 ENSMUST00000154861.7 ENSMUST00000136243.1 ENSMUST00000151804.1 AF064236 AJ010305 AK085412 BC010599 AK166385 AK170516 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29856 |
| All_trans: | MGI:1354727 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | smoothelin |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
