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Difference between revisions of "TSS:Hg 100263.1"

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Line 17: Line 17:
 
|P19ARF=
 
|P19ARF=
 
|TP16=
 
|TP16=
|all_trans=ENST00000579755.1:-50 uc003zpl.4:-50 ENST00000361570.4:73 NM_058195:73 uc064ska.1:73 KC806059:73 U38945:73 S78535:92 AB464504:110 ENST00000530628.2:153 uc064skd.1:153 BC015960:183 BC021998:183 U26727:206 BT007020:233 AJ844636:244 ENST00000470819.2:-299 uc064skk.1:-299
+
|all_trans=HGNC:1787
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.125
 
|cpg_percent=0.125
|distance=-50
+
|distance=73
 
|distance_to_tss=-78
 
|distance_to_tss=-78
 
|end=21994574
 
|end=21994574
 +
|end_of_center_position=21994569
 
|entrez_id=1029
 
|entrez_id=1029
 
|gc_percent=0.771144
 
|gc_percent=0.771144
|gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16
+
|gene_alias=ARF{{!}}CDK4I{{!}}CDKN2{{!}}CMM2{{!}}INK4{{!}}INK4A{{!}}MLM{{!}}MTS-1{{!}}MTS1{{!}}P14{{!}}P14ARF{{!}}P16{{!}}P16-INK4A{{!}}P16INK4{{!}}P16INK4A{{!}}P19{{!}}P19ARF{{!}}TP16
 
|gene_description=cyclin dependent kinase inhibitor 2A
 
|gene_description=cyclin dependent kinase inhibitor 2A
 
|gene_id=1029
 
|gene_id=1029
|gene_name=cyclin-dependent kinase inhibitor 2A
+
|gene_name=cyclin dependent kinase inhibitor 2A
 
|gene_source=HGNC:1787
 
|gene_source=HGNC:1787
 
|gene_symbol=CDKN2A
 
|gene_symbol=CDKN2A
Line 38: Line 39:
 
|nearest_refseq=NM_000077
 
|nearest_refseq=NM_000077
 
|nearest_unigene=Hs.512599
 
|nearest_unigene=Hs.512599
|num_trans=18
+
|num_trans=1029
 
|species=human
 
|species=human
 
|start=21994563
 
|start=21994563
 +
|start_of_center_position=21994568
 
|strand=-
 
|strand=-
|transcript_name=ENST00000579755.1 uc003zpl.4
+
|transcript_name=U38945
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100263.1
 
|tss_id=hg_100263.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=Q8N726
+
|uniprot_id=
 
}}
 
}}

Latest revision as of 17:39, 19 July 2021

Basic information about the TSS


TSS ID:hg_100263.1
Species:human
Chr:chr9
TSS Classification:yes
Start:21994563
End:21994574
Strand:-
TSS Score:1
Start of the center position in the TSS region:21994568
End of the center position in the TSS region:21994569



Gene and protein annotation


Transcript_name:U38945
Distance:73
GeneID:1029
HGNC/MGI_ID:HGNC:1787
UniProt_ID:
Gene_name:cyclin dependent kinase inhibitor 2A
Gene_symbol:CDKN2A
Gene_synonyms:ARF CDK4I CMM2 INK4 INK4a MTS1 p14 p14ARF p16 p16INK4a p19 p19Arf
Gene_source:HGNC:1787



Transcript annotation


Transcript_name:U38945
Distance:73
Num_trans:1029
All_trans:HGNC:1787



TATA-Box annotation


Distance to TSS:-78
Nearest PromoterID:NM_058195
Entrez ID:1029
Nearest Unigene:Hs.512599
Nearest Refseq:NM_000077
Nearest Ensembl:ENSG00000147889
Gene Name:cyclin dependent kinase inhibitor 2A
Gene Alias:ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16
Gene Description:cyclin dependent kinase inhibitor 2A
Gene Type:protein-coding
CpG%:0.125
GC%:0.771144
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):