Difference between revisions of "TSS:Mm 10331.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK153745:-370 ENSMUST00000192087.1:-371 |chr=chr2 |cpg_percent=0.02 |distance=-370 |distance_to_tss=-19996 |end=11522095 |entrez_id=170768 |gc_percent=0...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:3641824 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-19996 | |distance_to_tss=-19996 | ||
|end=11522095 | |end=11522095 | ||
| + | |end_of_center_position=11522086 | ||
|entrez_id=170768 | |entrez_id=170768 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=E330010H22Rik | + | |gene_alias=E330010H22Rik{{!}}iPFK-2{{!}}uPFK-2 |
| − | |gene_description= | + | |gene_description=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 |
|gene_id=100038528 | |gene_id=100038528 | ||
|gene_name=predicted gene 10851 | |gene_name=predicted gene 10851 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3641824 | |hgnc_mgi_id=MGI:3641824 | ||
| + | |iPFK-2= | ||
|nearest_ensembl=ENSMUSG00000026773 | |nearest_ensembl=ENSMUSG00000026773 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001177755 |
|nearest_refseq=NM_133232 | |nearest_refseq=NM_133232 | ||
|nearest_unigene=Mm.19669 | |nearest_unigene=Mm.19669 | ||
| − | |num_trans= | + | |num_trans=100038528 |
|species=mouse | |species=mouse | ||
|start=11522076 | |start=11522076 | ||
| + | |start_of_center_position=11522085 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=58(GCCTTTATAAAG,-,0.00),60(CTTTATAAAGAA,+,0.00) |
|transcript_name=AK153745 | |transcript_name=AK153745 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10331.1 | |tss_id=mm_10331.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uPFK-2= | ||
|uniprot_id=Q3U5B4 | |uniprot_id=Q3U5B4 | ||
}} | }} | ||
Latest revision as of 11:41, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11522085 |
|---|---|
| End of the center position in the TSS region: | 11522086 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK153745 |
|---|---|
| Distance: | -370 |
| Num_trans: | 100038528 |
| All_trans: | MGI:3641824 |
TATA-Box annotation
| Distance to TSS: | -19996 |
|---|---|
| Nearest PromoterID: | NM_001177755 |
| Entrez ID: | 170768 |
| Nearest Unigene: | Mm.19669 |
| Nearest Refseq: | NM_133232 |
| Nearest Ensembl: | ENSMUSG00000026773 |
| Gene Name: | predicted gene 10851 |
| Gene Alias: | E330010H22Rik|iPFK-2|uPFK-2 |
| Gene Description: | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 58(GCCTTTATAAAG,-,0.00),60(CTTTATAAAGAA,+,0.00) |
