Difference between revisions of "TSS:Hg 100505.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|NYD-SP22= | |NYD-SP22= | ||
|SMRP1= | |SMRP1= | ||
| − | |all_trans= | + | |all_trans=HGNC:19919 |
|bA573M23.4= | |bA573M23.4= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=94 |
|end=34381505 | |end=34381505 | ||
| + | |end_of_center_position=34381495 | ||
|entrez_id=84688 | |entrez_id=84688 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=CBE1 | + | |gene_alias=CBE1{{!}}NYD-SP22{{!}}SMRP1{{!}}bA573M23.4 |
|gene_description=chromosome 9 open reading frame 24 | |gene_description=chromosome 9 open reading frame 24 | ||
|gene_id=84688 | |gene_id=84688 | ||
| Line 21: | Line 22: | ||
|hgnc_mgi_id=HGNC:19919 | |hgnc_mgi_id=HGNC:19919 | ||
|nearest_ensembl=ENSG00000164972 | |nearest_ensembl=ENSG00000164972 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252195 |
|nearest_refseq=NM_032596 | |nearest_refseq=NM_032596 | ||
|nearest_unigene=Hs.50334 | |nearest_unigene=Hs.50334 | ||
| − | |num_trans= | + | |num_trans=84688 |
|species=human | |species=human | ||
|start=34381484 | |start=34381484 | ||
| + | |start_of_center_position=34381494 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-11(ACCCCTAAAAGG,-,0.00) |
|transcript_name=AK225981 | |transcript_name=AK225981 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:44, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34381494 |
|---|---|
| End of the center position in the TSS region: | 34381495 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK225981 |
|---|---|
| Distance: | 0 |
| Num_trans: | 84688 |
| All_trans: | HGNC:19919 |
TATA-Box annotation
| Distance to TSS: | 94 |
|---|---|
| Nearest PromoterID: | NM_001252195 |
| Entrez ID: | 84688 |
| Nearest Unigene: | Hs.50334 |
| Nearest Refseq: | NM_032596 |
| Nearest Ensembl: | ENSG00000164972 |
| Gene Name: | chromosome 9 open reading frame 24 |
| Gene Alias: | CBE1|NYD-SP22|SMRP1|bA573M23.4 |
| Gene Description: | chromosome 9 open reading frame 24 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -11(ACCCCTAAAAGG,-,0.00) |
