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Difference between revisions of "Template:TSSDetail"

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{{Loading|loadingimage=sprites.gif}}
 
 
<html><style>
 
<html><style>
 
table {
 
table {
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     text-align:left;
 
     text-align:left;
 
     width:60px;
 
     width:60px;
 +
}
 +
.item_label_middle {
 +
    text-align:left;
 +
    width:120px;
 
}
 
}
 
.item_label_long {
 
.item_label_long {
 
     text-align:left;
 
     text-align:left;
−
     width:200px;
+
     width:270px;
 +
    word-wrap:break-word;
 +
}
 +
.item_label_long2 {
 +
    text-align:left;
 +
    width:350px;
 
     word-wrap:break-word;
 
     word-wrap:break-word;
 
}
 
}
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</style></html>
 
</style></html>
 
<span class="section_head">Basic information about the TSS</span>
 
<span class="section_head">Basic information about the TSS</span>
−
<hr width="370px" size="2" style="text-align:left;margin-left:0" noshade>
+
<hr width="300px" size="2" style="text-align:left;margin-left:0" noshade>
−
<table width="370px"><tr><td>
+
<table style="width:400px"><tr><td style="width:48%;">
−
<div style="width:42%; float:left;">
+
<table class="inner" >
 +
<tr><th scope="row" class="item_label_long">TSS ID:</th><td>{{{tss_id}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Species:</th><td>{{{species|}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">Chr:</th><td>{{{chr|}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long">TSS Classification:</th><td>{{{tss_classification|}}}</td></tr>
 +
</table></td><td style="width:4%;"></td><td style="width:48%;">
 
<table class="inner" >
 
<table class="inner" >
−
<tr><th scope="row" class="item_label">TSS ID:</th><td>{{{tss_id}}}</td></tr>
+
<tr><th scope="row" class="item_label_middle">Start:</th><td>{{{start|}}}</td></tr>
−
<tr><th scope="row" class="item_label">Species:</th><td>{{{species}}}</td></tr>
+
<tr><th scope="row" class="item_label_middle">End:</th><td>{{{end|}}}</td></tr>
−
<tr><th scope="row" class="item_label">Chr:</th><td>{{{chr}}}</td></tr>
+
<tr><th scope="row" class="item_label_middle">Strand:</th><td>{{{strand|}}}</td></tr>
−
<tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification}}}</td></tr>
+
<tr><th scope="row" class="item_label_middle">TSS Score:</th><td>{{{tss_score|}}}</td></tr>
 
</table>
 
</table>
−
</div>
+
</td></tr>
−
<div style="width:42%; float:right;margin-left:40px">
 
−
<table class="inner" >
 
−
<tr><th scope="row" class="item_label">Start:</th><td>{{{start}}}</td></tr>
 
−
<tr><th scope="row" class="item_label">End:</th><td>{{{end}}}</td></tr>
 
−
<tr><th scope="row" class="item_label">Strand:</th><td>{{{strand}}}</td></tr>
 
−
<tr><th scope="row" class="item_label">TSS Score:</th><td>{{{tss_score}}}</td></tr>
 
 
</table>
 
</table>
−
</div></td></tr>
+
<table class="inner" width="420px">
 +
<tr><th scope="row" class="item_label_long2">Start of the center position in the TSS region:</th><td>{{{start_of_center_position|}}}</td></tr>
 +
<tr><th scope="row" class="item_label_long2">End of the center position in the TSS region:</th><td>{{{end_of_center_position|}}}</td></tr>
 
</table>
 
</table>
 
<br/>
 
<br/>
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<span class="section_head">Gene and protein annotation</span>
 
<span class="section_head">Gene and protein annotation</span>
 
<hr width="270px" size="2" style="text-align:left;margin-left:0" noshade>
 
<hr width="270px" size="2" style="text-align:left;margin-left:0" noshade>
−
<table border="0" ><tr><td>
+
<table border="0" style="width:560px"><tr><td style="width:36%;">
−
<div style="width:42%; float:left;">
 
 
<table class="inner" >
 
<table class="inner" >
−
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
+
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr>
−
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
+
<tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr>
−
<tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id}}}</td></tr>
+
<tr><th scope="row" align="left">GeneID:</th><td>{{#if:{{{gene_id|}}}|[[EntrezGene:{{{gene_id|}}}|{{{gene_id}}}]]|}}</td></tr>
−
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id}}}</td></tr>
+
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id|}}}</td></tr>
−
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id}}}</td></tr>
+
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id|}}}</td></tr>
−
</table></div>
+
</table></td><td style="width:4%;"></td><td style="width:60%;">
−
<div style="width:42%; float:right;">
 
 
<table class="inner" >
 
<table class="inner" >
−
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name|}}}</td></tr>
−
<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol|}}}</td></tr>
−
<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms|}}}</td></tr>
−
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source|}}}</td></tr>
−
</table>
+
</table></td></tr>
−
</div></td></tr>
 
 
</table>
 
</table>
 
<br/>
 
<br/>
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<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 
<table class="inner" border="0" >
 
<table class="inner" border="0" >
−
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
+
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr>
−
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
+
<tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr>
−
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans}}}</td></tr>
+
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans|}}}</td></tr>
−
<tr><th scope="row" align="left">All_trans:</th><td>{{{all_trans}}}</td></tr>
+
<tr><th scope="row" align="left">All_trans:</th><td>{{{all_trans|}}}</td></tr>
 
</table>
 
</table>
 
<br/>
 
<br/>
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<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 
<table class="inner" style="width: 600px;table-layout:fixed;">
 
<table class="inner" style="width: 600px;table-layout:fixed;">
−
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box|}}}</td></tr>
 
</table>
 
</table>
 +
 
{{#set:tss_id={{{tss_id}}}}}
 
{{#set:tss_id={{{tss_id}}}}}
 
{{#set:species={{{species}}}}}
 
{{#set:species={{{species}}}}}
 +
{{#set:distance_to_tss={{{distance_to_tss}}}}}
 +
{{#set:nearest_promoter_id={{{nearest_promoter_id}}}}}
 +
{{#set:entrez_id={{{entrez_id}}}}}
 +
{{#set:nearest_unigene={{{nearest_unigene}}}}}
 +
{{#set:nearest_refseq={{{nearest_refseq}}}}}
 +
{{#set:nearest_ensembl={{{nearest_ensembl}}}}}
 +
{{#set:gene_name={{{gene_name}}}}}
 +
{{#set:gene_alias={{{gene_alias}}}}}
 +
{{#set:gene_description={{{gene_description}}}}}
 +
{{#set:gene_type={{{gene_type}}}}}
 +
{{#set:cpg_percent={{{cpg_percent}}}}}
 +
{{#set:gc_percent={{{gc_percent}}}}}
 +
<!-- {{#set:tata_box={{{tata_box}}}}} -->
 +
{{#set:transcript_name={{{transcript_name}}}}}
 +
{{#set:distance={{{distance}}}}}
 +
{{#set:gene_id={{{gene_id}}}}}
 +
{{#set:hgnc_mgi_id={{{hgnc_mgi_id}}}}}
 +
{{#set:uniprot_id={{{uniprot_id}}}}}
 +
{{#set:gene_name={{{gene_name}}}}}
 +
{{#set:gene_symbol={{{gene_symbol|}}}}}
 +
{{#set:gene_synonyms={{{gene_synonyms}}}}}
 +
{{#set:gene_source={{{gene_source}}}}}
 +
{{#set:chr={{{chr}}}}}
 +
{{#set:start={{{start}}}}}
 +
{{#set:end={{{end}}}}}
 +
{{#set:tss_score={{{tss_score}}}}}
 +
{{#set:strand={{{strand}}}}}
 +
{{#set:transcript_name={{{transcript_name}}}}}
 +
{{#set:distance={{{distance}}}}}
 +
{{#set:num_trans={{{num_trans}}}}}
 +
<!--{{#set:all_trans={{{all_trans}}}}} -->
 +
{{#set:tss_classification={{{tss_classification}}}}}
 +
 +
[[Category:TSS_IDs]]

Latest revision as of 16:37, 29 July 2019

Basic information about the TSS

TSS ID:{{{tss_id}}}
Species:
Chr:
TSS Classification:
Start:
End:
Strand:
TSS Score:
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation

Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



Transcript annotation

Transcript_name:
Distance:
Num_trans:
All_trans:



TATA-Box annotation

Distance to TSS:
Nearest PromoterID:
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Description:
Gene Type:
CpG%:
GC%:
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):







"{{{cpg_percent}}}" is not a number. "{{{gc_percent}}}" is not a number.






"{{{start}}}" is not a number. "{{{end}}}" is not a number. "{{{tss_score}}}" is not a number.


"{{{num_trans}}}" is not a number.

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