Difference between revisions of "TSS:Hg 102062.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=64315 |entrez_id=9991 |gc_percent=0.39801 |gene_alias=ROD1 |gene_description=polypyrimidine tract binding protein 3 |gene_name=P...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=NA | ||
|distance_to_tss=64315 | |distance_to_tss=64315 | ||
| + | |end=112268713 | ||
| + | |end_of_center_position=112268712 | ||
|entrez_id=9991 | |entrez_id=9991 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_005156 | |nearest_refseq=NM_005156 | ||
|nearest_unigene=Hs.269988 | |nearest_unigene=Hs.269988 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=112268709 | ||
| + | |start_of_center_position=112268711 | ||
| + | |strand=- | ||
| + | |tata_box=-100(GGATTTTAAAAG,-,0.00),-99(GATTTTAAAAGA,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_102062.1 | |tss_id=hg_102062.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112268711 |
|---|---|
| End of the center position in the TSS region: | 112268712 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 64315 |
|---|---|
| Nearest PromoterID: | NM_001244898 |
| Entrez ID: | 9991 |
| Nearest Unigene: | Hs.269988 |
| Nearest Refseq: | NM_005156 |
| Nearest Ensembl: | ENSG00000119314 |
| Gene Name: | PTBP3 |
| Gene Alias: | ROD1 |
| Gene Description: | polypyrimidine tract binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -100(GGATTTTAAAAG,-,0.00),-99(GATTTTAAAAGA,-,0.00) |
