Difference between revisions of "TSS:Hg 100631.1"
From referenceTSS
| (3 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|DA1= | |DA1= | ||
|DA2B= | |DA2B= | ||
| + | |DA2B4= | ||
|HEL-S-273= | |HEL-S-273= | ||
|NEM4= | |NEM4= | ||
|TMSB= | |TMSB= | ||
| − | |all_trans= | + | |all_trans=HGNC:12011 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=35689933 | |end=35689933 | ||
| + | |end_of_center_position=35689926 | ||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=AMCD1 | + | |gene_alias=AMCD1{{!}}DA1{{!}}DA2B{{!}}DA2B4{{!}}HEL-S-273{{!}}NEM4{{!}}TMSB |
| − | |gene_description=tropomyosin 2 | + | |gene_description=tropomyosin 2 |
|gene_id=7169 | |gene_id=7169 | ||
| − | |gene_name=tropomyosin 2 | + | |gene_name=tropomyosin 2 |
|gene_source=HGNC:12011 | |gene_source=HGNC:12011 | ||
|gene_symbol=TPM2 | |gene_symbol=TPM2 | ||
| Line 23: | Line 25: | ||
|hgnc_mgi_id=HGNC:12011 | |hgnc_mgi_id=HGNC:12011 | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001301226 |
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
| − | |num_trans= | + | |num_trans=7169 |
|species=human | |species=human | ||
|start=35689918 | |start=35689918 | ||
| + | |start_of_center_position=35689925 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-31(CCTTTTAGGCGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000645482.3 ENST00000647435.1 ENST00000604975.1 AK223258 M12125 X06825 AK304803 AK300249 AK294522 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100631.1 | |tss_id=hg_100631.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DGC2 B4DTK3 B4E3P1 P07951 | + | |uniprot_id=A7XZE4 B4DGC2 B4DTK3 B4E3P1 P07951 V9HW25 |
}} | }} | ||
Latest revision as of 17:47, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35689925 |
|---|---|
| End of the center position in the TSS region: | 35689926 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000645482.3 ENST00000647435.1 ENST00000604975.1 AK223258 M12125 X06825 AK304803 AK300249 AK294522 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7169 |
| All_trans: | HGNC:12011 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001301226 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | tropomyosin 2 |
| Gene Alias: | AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB |
| Gene Description: | tropomyosin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(CCTTTTAGGCGC,+,0.00) |
