Difference between revisions of "TSS:Hg 100648.1"
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{{TSSDetail | {{TSSDetail | ||
|LZIP= | |LZIP= | ||
| − | |all_trans=BC042923:79 BC021005:-91 AB028950:-100 AF078828:111 | + | |TLN= |
| + | |all_trans=LF354354:56 MA589931:56 ENST00000314888.10:65 NM_006289:65 BC042923:79 BC021005:-91 AB028950:-100 AF078828:111 AF177198:129 ENST00000378192.2:156 BC020881:156 LF354355:-175 MA589932:-175 LF206432:-380 MA442009:-380 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=56 |
| − | |distance_to_tss=- | + | |distance_to_tss=-70 |
|end=35732270 | |end=35732270 | ||
| − | |entrez_id= | + | |end_of_center_position=35732265 |
| + | |entrez_id=7094 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias= | + | |gene_alias=ILWEQ{{!}}TLN{{!}}talin-1 |
| − | |gene_description= | + | |gene_description=talin 1 |
|gene_id=7094 | |gene_id=7094 | ||
| − | |gene_name= | + | |gene_name=TLN1 |
|gene_source=HGNC:11845 | |gene_source=HGNC:11845 | ||
|gene_symbol=TLN1 | |gene_symbol=TLN1 | ||
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11845 | |hgnc_mgi_id=HGNC:11845 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137076 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006289 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_006289 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.471014 |
| − | |num_trans= | + | |num_trans=15 |
|sLZIP= | |sLZIP= | ||
|species=human | |species=human | ||
|start=35732259 | |start=35732259 | ||
| + | |start_of_center_position=35732264 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |talin-1= |
| + | |transcript_name=LF354354 MA589931 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100648.1 | |tss_id=hg_100648.1 | ||
Latest revision as of 16:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35732264 |
|---|---|
| End of the center position in the TSS region: | 35732265 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF354354 MA589931 |
|---|---|
| Distance: | 56 |
| Num_trans: | 15 |
| All_trans: | LF354354:56 MA589931:56 ENST00000314888.10:65 NM_006289:65 BC042923:79 BC021005:-91 AB028950:-100 AF078828:111 AF177198:129 ENST00000378192.2:156 BC020881:156 LF354355:-175 MA589932:-175 LF206432:-380 MA442009:-380 |
TATA-Box annotation
| Distance to TSS: | -70 |
|---|---|
| Nearest PromoterID: | NM_006289 |
| Entrez ID: | 7094 |
| Nearest Unigene: | Hs.471014 |
| Nearest Refseq: | NM_006289 |
| Nearest Ensembl: | ENSG00000137076 |
| Gene Name: | TLN1 |
| Gene Alias: | ILWEQ|TLN|talin-1 |
| Gene Description: | talin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
