Difference between revisions of "TSS:Hg 102075.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=-294 |entrez_id=401548 |gc_percent=0.671642 |gene_alias=ATG24A |gene_description=sorting nexin family member 30 |gene_name=SNX3...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000671283.1:0 ENST00000440009.1:94 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance_to_tss=- | + | |distance=0 |
| + | |distance_to_tss=-200 | ||
| + | |end=112750570 | ||
| + | |end_of_center_position=112750560 | ||
|entrez_id=401548 | |entrez_id=401548 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_001012994 | |nearest_refseq=NM_001012994 | ||
|nearest_unigene=Hs.522350 | |nearest_unigene=Hs.522350 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=112750549 | ||
| + | |start_of_center_position=112750559 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000671283.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102075.1 | |tss_id=hg_102075.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:54, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 112750559 |
|---|---|
| End of the center position in the TSS region: | 112750560 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000671283.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000671283.1:0 ENST00000440009.1:94 |
TATA-Box annotation
| Distance to TSS: | -200 |
|---|---|
| Nearest PromoterID: | NM_001012994 |
| Entrez ID: | 401548 |
| Nearest Unigene: | Hs.522350 |
| Nearest Refseq: | NM_001012994 |
| Nearest Ensembl: | ENSG00000148158 |
| Gene Name: | SNX30 |
| Gene Alias: | ATG24A |
| Gene Description: | sorting nexin family member 30 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
