Difference between revisions of "TSS:Hg 101901.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PTPH1= | |PTPH1= | ||
| − | |all_trans= | + | |all_trans=HGNC:9655 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=109428977 | |end=109428977 | ||
| + | |end_of_center_position=109428971 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=PTP-H1 | + | |gene_alias=PTP-H1{{!}}PTPH1 |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase non-receptor type 3 |
|gene_id=5774 | |gene_id=5774 | ||
| − | |gene_name= | + | |gene_name=protein tyrosine phosphatase non-receptor type 3 |
|gene_source=HGNC:9655 | |gene_source=HGNC:9655 | ||
|gene_symbol=PTPN3 | |gene_symbol=PTPN3 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| − | |num_trans= | + | |num_trans=5774 |
|species=human | |species=human | ||
|start=109428964 | |start=109428964 | ||
| + | |start_of_center_position=109428970 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=48(TTATTTAAAAGC,-,0.00) |
|transcript_name=AK316118 AK296388 | |transcript_name=AK316118 AK296388 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101901.1 | |tss_id=hg_101901.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B7Z3V3 B7ZA03 | + | |uniprot_id=B7Z3V3 B7ZA03 Q8N4S3 |
}} | }} | ||
Latest revision as of 18:15, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109428970 |
|---|---|
| End of the center position in the TSS region: | 109428971 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK316118 AK296388 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5774 |
| All_trans: | HGNC:9655 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001145371 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 48(TTATTTAAAAGC,-,0.00) |
