Difference between revisions of "TSS:Hg 102217.1"
From referenceTSS
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| Line 7: | Line 7: | ||
|TN= | |TN= | ||
|TN-C= | |TN-C= | ||
| + | |all_trans=LF355095:-11 MA590672:-11 LF355094:66 MA590671:66 LF355093:154 MA590670:154 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-11 |
| − | |distance_to_tss= | + | |distance_to_tss=39973 |
|end=115078191 | |end=115078191 | ||
| + | |end_of_center_position=115078184 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=150-225 | + | |gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C |
|gene_description=tenascin C | |gene_description=tenascin C | ||
|gene_name=TNC | |gene_name=TNC | ||
| Line 22: | Line 24: | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=115078176 | |start=115078176 | ||
| + | |start_of_center_position=115078183 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF355095 MA590672 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102217.1 | |tss_id=hg_102217.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:58, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115078183 |
|---|---|
| End of the center position in the TSS region: | 115078184 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF355095 MA590672 |
|---|---|
| Distance: | -11 |
| Num_trans: | 6 |
| All_trans: | LF355095:-11 MA590672:-11 LF355094:66 MA590671:66 LF355093:154 MA590670:154 |
TATA-Box annotation
| Distance to TSS: | 39973 |
|---|---|
| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | TNC |
| Gene Alias: | 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
