Difference between revisions of "TSS:Hg 102237.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-14 |entrez_id=101928775 |gc_percent=0.527363 |gene_alias=- |gene_description=uncharacterized LOC101928775 |gene_name=LOC101928...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000645745.1:0 ENST00000644998.1:0 ENST00000644298.1:0 ENST00000433546.3:2 NR_109805:2 ENST00000646338.1:-64 ENST00000642165.1:377 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=0 | ||
|distance_to_tss=-14 | |distance_to_tss=-14 | ||
| + | |end=115744266 | ||
| + | |end_of_center_position=115744254 | ||
|entrez_id=101928775 | |entrez_id=101928775 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC101928775 | |gene_description=uncharacterized LOC101928775 | ||
| + | |gene_id=101928775 | ||
|gene_name=LOC101928775 | |gene_name=LOC101928775 | ||
| + | |gene_source=EntrezGene:101928775 | ||
| + | |gene_symbol=LOC101928775 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000228714 | |nearest_ensembl=ENSG00000228714 | ||
|nearest_promoter_id=NR_109805 | |nearest_promoter_id=NR_109805 | ||
|nearest_refseq=NR_109805 | |nearest_refseq=NR_109805 | ||
|nearest_unigene=Hs.522362 | |nearest_unigene=Hs.522362 | ||
| − | |tata_box= | + | |num_trans=7 |
| + | |species=human | ||
| + | |start=115744240 | ||
| + | |start_of_center_position=115744253 | ||
| + | |strand=- | ||
| + | |tata_box=-86(GCGTATTAAGAG,-,0.00) | ||
| + | |transcript_name=ENST00000645745.1 ENST00000644998.1 ENST00000644298.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102237.1 | |tss_id=hg_102237.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 16:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115744253 |
|---|---|
| End of the center position in the TSS region: | 115744254 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000645745.1 ENST00000644998.1 ENST00000644298.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000645745.1:0 ENST00000644998.1:0 ENST00000644298.1:0 ENST00000433546.3:2 NR_109805:2 ENST00000646338.1:-64 ENST00000642165.1:377 |
TATA-Box annotation
| Distance to TSS: | -14 |
|---|---|
| Nearest PromoterID: | NR_109805 |
| Entrez ID: | 101928775 |
| Nearest Unigene: | Hs.522362 |
| Nearest Refseq: | NR_109805 |
| Nearest Ensembl: | ENSG00000228714 |
| Gene Name: | LOC101928775 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101928775 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(GCGTATTAAGAG,-,0.00) |
