Difference between revisions of "TSS:Hg 102346.1"
From referenceTSS
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|EPB7= | |EPB7= | ||
|EPB72= | |EPB72= | ||
| + | |all_trans=LF346989:-243 MA582566:-243 LF346988:431 MA582565:431 LF346990:-449 MA582567:-449 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-243 |
| − | |distance_to_tss= | + | |distance_to_tss=29376 |
|end=121340881 | |end=121340881 | ||
| + | |end_of_center_position=121340875 | ||
|entrez_id=2040 | |entrez_id=2040 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
| − | |gene_alias=BND7 | + | |gene_alias=BND7{{!}}EPB7{{!}}EPB72 |
|gene_description=stomatin | |gene_description=stomatin | ||
|gene_name=STOM | |gene_name=STOM | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000148175 | |nearest_ensembl=ENSG00000148175 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_198194 |
|nearest_refseq=NM_004099 | |nearest_refseq=NM_004099 | ||
|nearest_unigene=Hs.253903 | |nearest_unigene=Hs.253903 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=121340867 | |start=121340867 | ||
| + | |start_of_center_position=121340874 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF346989 MA582566 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102346.1 | |tss_id=hg_102346.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:01, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 121340874 |
|---|---|
| End of the center position in the TSS region: | 121340875 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF346989 MA582566 |
|---|---|
| Distance: | -243 |
| Num_trans: | 6 |
| All_trans: | LF346989:-243 MA582566:-243 LF346988:431 MA582565:431 LF346990:-449 MA582567:-449 |
TATA-Box annotation
| Distance to TSS: | 29376 |
|---|---|
| Nearest PromoterID: | NM_198194 |
| Entrez ID: | 2040 |
| Nearest Unigene: | Hs.253903 |
| Nearest Refseq: | NM_004099 |
| Nearest Ensembl: | ENSG00000148175 |
| Gene Name: | STOM |
| Gene Alias: | BND7|EPB7|EPB72 |
| Gene Description: | stomatin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
