Difference between revisions of "TSS:Hg 102296.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=13 |entrez_id=55755 |gc_percent=0.656716 |gene_alias=C48|Cep215|MCPH3 |gene_description=CDK5 regulatory subunit associated prot...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |Cep215= | ||
| + | |MCPH3= | ||
| + | |all_trans=HGNC:18672 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=10 | ||
| + | |end=120580177 | ||
| + | |end_of_center_position=120580158 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=C48 | + | |gene_alias=C48{{!}}Cep215{{!}}MCPH3 |
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
| − | |gene_name=CDK5RAP2 | + | |gene_id=55755 |
| + | |gene_name=CDK5 regulatory subunit associated protein 2 | ||
| + | |gene_source=HGNC:18672 | ||
| + | |gene_symbol=CDK5RAP2 | ||
| + | |gene_synonyms=C48 CEP215 FLJ10867 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073557 |
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| + | |num_trans=55755 | ||
| + | |species=human | ||
| + | |start=120580137 | ||
| + | |start_of_center_position=120580157 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000360822.7 ENST00000349780.9 ENST00000360190.8 ENST00000491334.1 KP294527 BC146782 AL833481 AB046853 BX537759 AK122913 BX537421 BX537708 BC019577 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102296.1 | |tss_id=hg_102296.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MRG9 A0A0C4ZLW1 B3KVI2 Q05CZ3 Q7Z3M0 Q96SN8 | ||
}} | }} | ||
Latest revision as of 18:24, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120580157 |
|---|---|
| End of the center position in the TSS region: | 120580158 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000360822.7 ENST00000349780.9 ENST00000360190.8 ENST00000491334.1 KP294527 BC146782 AL833481 AB046853 BX537759 AK122913 BX537421 BX537708 BC019577 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55755 |
| All_trans: | HGNC:18672 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NR_073557 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48|Cep215|MCPH3 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
