Difference between revisions of "TSS:Hg 103117.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|KPC2= | |KPC2= | ||
|UBADC1= | |UBADC1= | ||
| − | |all_trans= | + | |all_trans=HGNC:30221 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
|distance=25 | |distance=25 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-37 |
|end=135961415 | |end=135961415 | ||
| + | |end_of_center_position=135961410 | ||
|entrez_id=10422 | |entrez_id=10422 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| − | |gene_alias=GBDR1 | + | |gene_alias=GBDR1{{!}}KPC2{{!}}UBADC1 |
|gene_description=UBA domain containing 1 | |gene_description=UBA domain containing 1 | ||
|gene_id=10422 | |gene_id=10422 | ||
| Line 16: | Line 17: | ||
|gene_source=HGNC:30221 | |gene_source=HGNC:30221 | ||
|gene_symbol=UBAC1 | |gene_symbol=UBAC1 | ||
| − | |gene_synonyms=GBDR1 | + | |gene_synonyms=GBDR1 KPC2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:30221 | |hgnc_mgi_id=HGNC:30221 | ||
| Line 23: | Line 24: | ||
|nearest_refseq=NM_016172 | |nearest_refseq=NM_016172 | ||
|nearest_unigene=Hs.9194 | |nearest_unigene=Hs.9194 | ||
| − | |num_trans= | + | |num_trans=10422 |
|species=human | |species=human | ||
|start=135961404 | |start=135961404 | ||
| + | |start_of_center_position=135961409 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC004967 HM005604 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103117.1 | |tss_id=hg_103117.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A140VK64 |
}} | }} | ||
Latest revision as of 18:41, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 135961409 |
|---|---|
| End of the center position in the TSS region: | 135961410 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC004967 HM005604 |
|---|---|
| Distance: | 25 |
| Num_trans: | 10422 |
| All_trans: | HGNC:30221 |
TATA-Box annotation
| Distance to TSS: | -37 |
|---|---|
| Nearest PromoterID: | NM_016172 |
| Entrez ID: | 10422 |
| Nearest Unigene: | Hs.9194 |
| Nearest Refseq: | NM_016172 |
| Nearest Ensembl: | ENSG00000130560 |
| Gene Name: | UBA domain containing 1 |
| Gene Alias: | GBDR1|KPC2|UBADC1 |
| Gene Description: | UBA domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
