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Difference between revisions of "TSS:Hg 103282.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000341511.10:30 uc064xhf.1:30 AF178941:30 ENST00000494046.5:36 uc064xhx.1:36 AK308738:36 ENST00000464876.5:42 uc064xhw.1:42 BC090860:42 ENST00000371605.7:-43 ENST00000265662.9:-43 NM_001606:-43 uc064xhg.1:-43 uc011mem.1:-43 BC064542:44 ENST00000492260.5:49 uc064xht.1:49 BC029282:49 AF327657:74 AB384556:76
+
|all_trans=HGNC:32
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.2
 
|cpg_percent=0.2
|distance=30
+
|distance=0
|distance_to_tss=56
+
|distance_to_tss=5
 
|end=137028245
 
|end=137028245
 +
|end_of_center_position=137028233
 
|entrez_id=20
 
|entrez_id=20
 
|gc_percent=0.865672
 
|gc_percent=0.865672
Line 24: Line 25:
 
|species=human
 
|species=human
 
|start=137028219
 
|start=137028219
 +
|start_of_center_position=137028232
 
|strand=-
 
|strand=-
|transcript_name=ENST00000341511.10 uc064xhf.1 AF178941
+
|transcript_name=ENST00000341511.11
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_103282.1
 
|tss_id=hg_103282.1

Latest revision as of 18:45, 19 July 2021

Basic information about the TSS


TSS ID:hg_103282.1
Species:human
Chr:chr9
TSS Classification:yes
Start:137028219
End:137028245
Strand:-
TSS Score:1
Start of the center position in the TSS region:137028232
End of the center position in the TSS region:137028233



Gene and protein annotation


Transcript_name:ENST00000341511.11
Distance:0
GeneID:20
HGNC/MGI_ID:HGNC:32
UniProt_ID:Q9BZC7
Gene_name:ATP binding cassette subfamily A member 2
Gene_symbol:ABCA2
Gene_synonyms:
Gene_source:HGNC:32



Transcript annotation


Transcript_name:ENST00000341511.11
Distance:0
Num_trans:20
All_trans:HGNC:32



TATA-Box annotation


Distance to TSS:5
Nearest PromoterID:NM_001606
Entrez ID:20
Nearest Unigene:Hs.421202
Nearest Refseq:NM_001606
Nearest Ensembl:ENSG00000107331
Gene Name:ATP binding cassette subfamily A member 2
Gene Alias:ABC2
Gene Description:ATP binding cassette subfamily A member 2
Gene Type:protein-coding
CpG%:0.2
GC%:0.865672
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):